Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  157 bits (398), Expect = 1e-42
 Identities = 136/454 (29%), Positives = 220/454 (48%), Gaps = 39/454 (8%)

Query: 183 MFMMTDRNFNVFASDLTHSTLIGKDLTKEKPLFKNLVSGQYVTFS-DADSHWFAVSQTEI 241
           + +  D  F  F    T  T    +L       ++++ G  V  + D +   FA+ +  I
Sbjct: 200 LLLPKDGGFVPFGGTFTTDTSAASEL-------ESVMQGDEVIRTIDLNGKSFALYRHGI 252

Query: 242 -DGENKLFTIIDI---QQIVQTYKRDIQLIIAGFSGFSCVMLIGLYWVLSKELSGVRQIR 297
            D   K F ++DI   +   +    DI+L +      + ++   + W ++K ++  R I 
Sbjct: 253 KDYSGKTFGVLDIALDRSHSEQAMSDIRLKLIMIGVIALLIGTAIAWFIAKSIT--RPIA 310

Query: 298 EWILALSD-----GQIKERRPIKFHNELDTIAQSLENLQFRL---LDVVRNSHRTMNDLS 349
           E   AL+D     G +  R  +K  +E+  +AQ+      ++   +  V +S   +   +
Sbjct: 311 ETTDALNDIAEGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHATVAQVSDSTSLLATSA 370

Query: 350 IKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAELNAETAQKLIA 409
            + + IT+  +   N    E    EQVATA  +++ T  +V   A  A   A  A +   
Sbjct: 371 EEMSAITHETQQMANRQHLET---EQVATAMNEMAATVQEVAHNATDAADAATHASESTE 427

Query: 410 ESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTDVINNISDQTNLLALNAAI 469
           +   +++       ++   I ++   IN+L   +  I SV  VI NI+DQTNLLALNAAI
Sbjct: 428 QGKLLVEKVISTISLLADEIAQAANAINELERNTTQIDSVLVVIRNIADQTNLLALNAAI 487

Query: 470 EAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQEQSQLADQVMTRN------ 523
           EAARAGEQGRGFAVVADEVR+LA +TQ ST +IQ +I  LQ+ ++     M  +      
Sbjct: 488 EAARAGEQGRGFAVVADEVRTLASRTQASTTEIQQMIETLQQSAKATVSSMNTSTATTQS 547

Query: 524 -VSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTEDVAKQMEDIRYL 582
            VSL+HE   A  A       I+  V  IS +N  +++AANEQ  V+ ++ K + +I  +
Sbjct: 548 CVSLVHEAGSALEA-------ITQAVSTISQMNIQIASAANEQCAVSAEINKNVNNINDI 600

Query: 583 VQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
                 +  +T +A   ++ L+  L   LS FKI
Sbjct: 601 ATNATESAMQTARAGDELAQLSMRLTTLLSQFKI 634