Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  221 bits (563), Expect = 6e-62
 Identities = 128/356 (35%), Positives = 210/356 (58%)

Query: 260 YKRDIQLIIAGFSGFSCVMLIGLYWVLSKELSGVRQIREWILALSDGQIKERRPIKFHNE 319
           Y   I++++      S ++L+    +    ++ ++ ++ ++  L++G + +R     +NE
Sbjct: 183 YDESIKIMLFILVIVSLLVLVTSTAISKFIITSIKTVQSFMAKLANGDLSDRIADIGNNE 242

Query: 320 LDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATA 379
           L  +AQ       ++ ++        ++ +     +  ++    +NSQQ L  +EQ+ATA
Sbjct: 243 LGVLAQGCNETADKISEMTEQLITVADNTATSAEILASTMNQVEHNSQQMLVQVEQIATA 302

Query: 380 TTQLSCTSFDVMQQAQSAELNAETAQKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQL 439
             ++S T+ +V + A  AE +A  A   ++E +  +  S   +  +  +I +S  I+NQL
Sbjct: 303 LNEMSSTALEVSKNATEAETSAAEAMGNVSEGNKSLGESDNISVKIGAAIRDSGAIVNQL 362

Query: 440 REFSDNISSVTDVINNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQST 499
           +++S  I SV DVI +IS+QTNLLALNAAIEAARAGE GRGFAVVADEVRSLA KTQQST
Sbjct: 363 KDYSIEIGSVIDVITSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAAKTQQST 422

Query: 500 IDIQGIILKLQEQSQLADQVMTRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVS 559
           IDIQ II KLQ Q++ AD  M  N SL+ E+Q+ +  + ++F  IS  V  ISN+N++V+
Sbjct: 423 IDIQEIISKLQSQAEKADHYMKANTSLLDESQMVSEKVRSAFQGISASVNAISNVNTVVA 482

Query: 560 TAANEQKIVTEDVAKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFK 615
           TA++EQ  VTED+++ +     +V +N+  +    +A  ++          L+FFK
Sbjct: 483 TASSEQSSVTEDISRNISSTVEMVDQNVVGIGNASKACHDVLSEAGKQKQLLAFFK 538



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 29  LSDQTKSI------SSLSSQQAQERLQSYQDSLDFYKKLNTSL 65
           ++D+ +S+      S++  Q+   +LQS  +  D Y K NTSL
Sbjct: 407 VADEVRSLAAKTQQSTIDIQEIISKLQSQAEKADHYMKANTSL 449