Pairwise Alignments

Query, 620 a.a., toxin coregulated pilus biosynthesis protein I from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  167 bits (424), Expect = 1e-45
 Identities = 122/405 (30%), Positives = 199/405 (49%), Gaps = 28/405 (6%)

Query: 219 VSGQYVTFSDADSHWFAVSQTEIDGENKLFTIIDIQQIVQTYKRDIQLIIAGFSGFSCVM 278
           V+  Y+   D    W+ V+Q        L T    Q ++ T      +I AGF   + V+
Sbjct: 255 VASSYIPSMD----WYLVAQVPEAEVFALLTDAAYQILIWTL-----IIAAGFIMLAIVV 305

Query: 279 LIGLYWVLSKELSGVRQIREWILALSDGQIKERRPIKFHNELDTIAQSLENLQFRLLDVV 338
              +   +++  +  R I E      +G +++R P+K  +E+  +AQ   +   ++ D V
Sbjct: 306 AGSVSRPIAQVAAMFRDIGE-----GEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSV 360

Query: 339 RNSHRTMNDLSIKQTDITYSIEGNTNNSQQELGLIEQVATATTQLSCTSFDVMQQAQSAE 398
               +T   L     D++   +    +S ++      V TA  ++  T  ++   A  A 
Sbjct: 361 IEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAA 420

Query: 399 LNAETA-------QKLIAESHDIIDSSSKQTEMVTLSIHESQQIINQLREFSDNISSVTD 451
           + A+ A       Q ++  + D I+  S+  E V        ++I  L   + +I  + D
Sbjct: 421 VAAKDADTESNSGQVVVTRARDTINQLSQDVEQVG-------EVIESLATHTKSIGGILD 473

Query: 452 VINNISDQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAVKTQQSTIDIQGIILKLQE 511
           VI  IS+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +T  ST ++QG+I KLQ 
Sbjct: 474 VIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQS 533

Query: 512 QSQLADQVMTRNVSLIHETQVANRALIASFNLISDKVLEISNINSIVSTAANEQKIVTED 571
           ++  A   M ++ +  HE   A      S   ISD++  IS++N  V+ A  EQ  V ED
Sbjct: 534 EASRAVNAMAQSRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVVED 593

Query: 572 VAKQMEDIRYLVQENLSAMERTKQANQNISDLTTNLNDALSFFKI 616
           + + + +I  + Q   S  +   QA+  ++ L   L+  ++ FK+
Sbjct: 594 INRNVTEINEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 638