Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., Mobile element protein from Pseudomonas fluorescens FW300-N1B4

 Score = 87.4 bits (215), Expect = 5e-22
 Identities = 88/319 (27%), Positives = 128/319 (40%), Gaps = 41/319 (12%)

Query: 24  VCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPHSSPDTKLTDELRALILTMRDKRNLG 83
           + R  G+SRPTL KW  RY + GI GL+  SRRPH SP       L  LI   R+  + G
Sbjct: 17  LARHYGVSRPTLDKWLARYAERGIDGLKELSRRPHHSPHQISEHVLELLIAYKREHPSWG 76

Query: 84  ARRLQTELIRLHK----IHLSTA----------TLHKVLSEASVKPIVTYRRKKDFQRYE 129
             +L   L   H       LSTA             + L+     PI      +  Q + 
Sbjct: 77  PEKLVHNLKNTHAELSWPALSTAGEWLKRAGLVQKRRFLNRPPTGPIPLREATEPNQTWA 136

Query: 130 RPIPGDRVQMDTCKIAPGIYQYTAIDDCSRYRVLRCYSRRTAANTVDFIDCVVEEMPFPI 189
               GD       +  P     T  D  SR+ +L C ++ + A   +  D    E   P 
Sbjct: 137 ADFKGDFALQSGQRCFP----LTISDHVSRF-LLLCRAQSSVAGAREGFDWAFREYGLP- 190

Query: 190 QRIQTDRGREFFAEKVQK------QLMIYGIKFRPNKPGSPHLNGKVERSQKTDKSEFYP 243
             I+TD G  F +  V +        +  GI     +PG P  NG+ ER  +T K+    
Sbjct: 191 NVIRTDNGSPFASTGVSRISSLAAWFIRLGIYPERIQPGRPDQNGRHERMHRTLKAALLQ 250

Query: 244 TIDVSVGLQELDLLLAEWQHYYNWERPHSSLNGLTPIDRITEISDQTPLSEEVSQNYQIK 303
           T + ++  Q+  L    ++H YN+ERPH +L    P D     S             ++ 
Sbjct: 251 TPEHNLVQQQ--LAFERFRHEYNYERPHKALAMKVPADVYVPSS-------------RLY 295

Query: 304 KERFQEQNYKLDLQLRKLK 322
             R  E NY   + +RK++
Sbjct: 296 DGRVPEVNYPSQMLVRKVR 314