Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., Mobile element protein from Xanthomonas campestris pv. campestris strain 8004

 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 24/252 (9%)

Query: 43  KQCGIAGLESQSRRPHSSPDTKLTDELRALILTMRD-KRNLGARRLQTELIRLHKIHLST 101
           + C +AG+   + R H+   T  T  L A ++ +   +R  G RRL  +L+R     ++ 
Sbjct: 84  RACRLAGISRDAFR-HAPTPTPATQTLSARLVELAQARRRFGYRRLH-DLLRPEFPQVNH 141

Query: 102 ATLHKVLSEASVKPIVTYRRKKDFQRYER-PI-----PGDRVQMDTC--KIAPG--IYQY 151
             ++++  EA +   V +R+K  F   +R P+     P + + MD    ++A G  I   
Sbjct: 142 KKIYRLYREAKLS--VRWRKKAKFPAAQRQPLRPARHPNEVISMDFVFDQLASGRRIKCL 199

Query: 152 TAIDD----CSRYRVLRCYSRRTAANTVDFIDCVVEEMPFPIQRIQTDRGREFFAEKVQK 207
           T  DD    C    V    S       ++ I C      +P + ++TD G EF +     
Sbjct: 200 TVADDFTHECVDIAVDHGISGAYVMRVLEQIACF---RGYP-RAVRTDNGPEFTSRAFIA 255

Query: 208 QLMIYGIKFRPNKPGSPHLNGKVERSQKTDKSEFYPTIDVSVGLQELDLLLAEWQHYYNW 267
                GI+    +PG P  NG +E      + E       +  +Q  +++ A+W+  +N 
Sbjct: 256 WAQQRGIEHILIEPGKPMQNGYIESFNGKFRDECLNEHWFTSLIQAREVI-ADWRRDFNE 314

Query: 268 ERPHSSLNGLTP 279
            RPHSS   + P
Sbjct: 315 VRPHSSCGRIPP 326