Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 268 a.a., Integrase, catalytic region from Pseudomonas syringae pv. syringae B728a

 Score = 47.0 bits (110), Expect = 5e-10
 Identities = 59/251 (23%), Positives = 114/251 (45%), Gaps = 48/251 (19%)

Query: 61  PDTKLTDELRALILTMRDKRNL-GARRLQTELIRLHKIHLSTATLHKVLSEASVKPIVTY 119
           PD  L  E+  +     ++R L GARR+ T +IR     ++   + ++++E  ++ +V  
Sbjct: 27  PDAALKQEIERVY---HEERGLYGARRI-TAVIRNSGTLINKKVVERLMAELGLRSVV-- 80

Query: 120 RRKKDFQRYERPIPGDRVQMDTCKIAPGIYQ--YTA-------IDDCSRYRV-------- 162
            R K ++ Y+  +          KIAP + +  +TA       + D + ++V        
Sbjct: 81  -RPKKYRSYKGTVG---------KIAPNLLERKFTAQRPNQKWVTDVTEFKVANRKLYLS 130

Query: 163 --LRCYSRRTAANTVDFIDC---VVEEMPFPIQRIQ--------TDRGREFFAEKVQKQL 209
             +  Y+    A  V    C   V   +   +Q++Q        +D+G ++   + +++L
Sbjct: 131 PVMDLYNGEIVAYEVSTRPCFELVTNMLDKALQQLQDEPKLVMHSDQGWQYQHAQYRQKL 190

Query: 210 MIYGIKFRPNKPGSPHLNGKVERSQKTDKSEFYPTIDVSVGLQELDLLLAEWQHYYNWER 269
            + G+K   ++ G+   N  +E    T KSEF+  +     ++EL   L E+  YYN +R
Sbjct: 191 AVKGVKQSMSRKGNCLDNAAMESFFGTLKSEFF-YLKRFESIEELKAGLDEYIRYYNNDR 249

Query: 270 PHSSLNGLTPI 280
               LNGL+P+
Sbjct: 250 IKLKLNGLSPV 260