Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., transposase from Sinorhizobium meliloti 1021

 Score = 77.4 bits (189), Expect = 5e-19
 Identities = 77/283 (27%), Positives = 118/283 (41%), Gaps = 28/283 (9%)

Query: 20  DAGLVCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPHSSPDTKLTDELRALILTMRDK 79
           +  ++CR  GISR T  K   RY  CG+ GL  +SRRP+   +       + ++   ++K
Sbjct: 19  EIAVLCREFGISRKTGHKIISRYNACGLEGLTDRSRRPYRHANQLPFQIEKLIVRAKQEK 78

Query: 80  RNLGARRLQTELIRLHKIHLSTA--TLHKVLSEASVKPIVTYRRKKDFQRYERPIPGD-R 136
            N GA +++  L RL+    + A  T+H VL       +V +R+++  +    P+    R
Sbjct: 79  PNWGAPKIRERLARLYPDVQTPAISTVHAVLDR---NGLVEHRKRRRNRAQGTPLSQPCR 135

Query: 137 VQMDTCKIAPG---------IYQYTAIDDCSRYRVLRCYSRRTAANTVDF--IDCVVEEM 185
                C    G          Y  T  D  SRY +L C +  T      F   + V +E 
Sbjct: 136 ANDLWCADYKGEFMLADKRYCYPLTITDFASRY-LLACEALHTTKEVYAFTVFERVFKEF 194

Query: 186 PFPIQRIQTDRGREFFAEKVQKQL-------MIYGIKFRPNKPGSPHLNGKVERSQKTDK 238
             P + I+TD G  F +      L       +  GI     KPG+P  NG+ ER   T K
Sbjct: 195 GLP-RAIRTDNGVPFASPNALFNLSRLSVWWLRLGIDIERIKPGNPQQNGRHERMHLTLK 253

Query: 239 SEFYPTIDVSVGLQELDLLLAEWQHYYNWERPHSSLNGLTPID 281
            E   T        +      ++   +N ERPH +LN   P +
Sbjct: 254 LE--TTKPAGANFLQQQARFDDFVEEFNIERPHRALNMACPAE 294