Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., Integrase, catalytic region (NCBI) from Rhodospirillum rubrum S1H

 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 19/173 (10%)

Query: 137 VQMDTCKIAPG---IYQYTAIDDCSRYRVLRCYSRRTAANTVDFIDCVVEEMPFPIQRIQ 193
           V +D+C++      +  + AID  S++  +  +          F+  VVE  P+ I  + 
Sbjct: 90  VHIDSCELCHADGKLVMFLAIDRVSKFTYVDFHDCAGKMEGAAFLRNVVEAFPYQIHIVL 149

Query: 194 TDRG--------------REFFAEKVQKQLMI-YGIKFRPNKPGSPHLNGKVERSQKTDK 238
           TD G              R FF   +  ++ I +GI+ R  KP  P  NG+ ER  +T K
Sbjct: 150 TDNGMAFADLPKNRNGPSRRFFGPHIFDRVCIEHGIEHRLTKPYHPWTNGQAERMNRTIK 209

Query: 239 SEFYPTIDVSVGLQELDLLLAEWQHYYNWERPHSSLNGLTPIDRITEISDQTP 291
                       L+ L   +  +   YN+ +   +L   TP   I +   + P
Sbjct: 210 DATIKAYHYD-DLESLKAHVLAFVTAYNFAKHLKALRWRTPYQAICDARTKDP 261