Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., ISSod13, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.5 bits (171), Expect = 6e-17
 Identities = 85/330 (25%), Positives = 130/330 (39%), Gaps = 54/330 (16%)

Query: 5   IQQRLQWVKMYEECGDAGLVCRRCGISRPTLRKWAKRYKQCGIAGLESQSRRPHSSPDTK 64
           I+ +   + + EE  +    C+  G+SR T  ++ +     G+  L  +SRR   SP+ K
Sbjct: 9   IKHKTGLLNLAEELSNVSRACKVMGVSRDTFYRYRELVDDGGVDALIEKSRR---SPNLK 65

Query: 65  -------------------------LTDELR--ALILTMRDKRNLGARR-LQTELIRLHK 96
                                     ++ELR   + ++    R++  R  L+    RL  
Sbjct: 66  NRVEEAVEQAVMEYAIEFPAHGQHRTSNELRKKGVFVSGSGVRSIWLRHDLENFKKRLKA 125

Query: 97  IHLSTATLHKVLSEASVKPIVTYRRKKDFQ---RYERPIPGDRVQMDT-----CKIAPGI 148
           +    A     L++  +  +   R+K D +     E   PG     DT      K    I
Sbjct: 126 LEAKVARDGIQLTDEQIAALE--RKKHDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRI 183

Query: 149 YQYTAIDDCSRYRVLRCYSRRTAANTVDFIDCVV----EEMPFPIQRIQTDRGREFFAE- 203
           YQ T +D   +    + Y+ +T     D ++  V    E    P+ RI TDRG E+  + 
Sbjct: 184 YQQTYVDTYCKVAHCKLYTTKTPITAADLLNDKVLPFYESQQLPVLRILTDRGTEYCGKV 243

Query: 204 ---KVQKQLMIYGIKFRPNKPGSPHLNGKVERSQKTDKSEFYPTI---DVSVGLQELDLL 257
                Q  L I  I     K  SP  NG  ER  KT  +EFY       +   L+EL   
Sbjct: 244 EHHDYQLYLAINDIDHTKTKAMSPQTNGICERFHKTILNEFYQVTFRKKLYQTLEELQKD 303

Query: 258 LAEWQHYYNWERPHSS--LNGLTPIDRITE 285
           L EW  YYN ER H     NG TP++ + +
Sbjct: 304 LDEWLSYYNNERTHQGKMCNGRTPVETLID 333