Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., ISDvu4, transposase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 57.8 bits (138), Expect = 4e-13
 Identities = 75/339 (22%), Positives = 131/339 (38%), Gaps = 44/339 (12%)

Query: 6   QQRLQWVKMYEECGDAGLVCRRCGISRPTLRKWAKRYKQCGIAGLESQ---SRRPHSSPD 62
           +++L  +++  E  +    CR  G SR    +  + Y+  G  GL  +    R PH +  
Sbjct: 9   RRKLSLLELASELDNVSKACRIMGYSRQQFYEIRRNYQTFGAEGLVDRLPGPREPHPNRV 68

Query: 63  TKLTDE----------------------LRALILTMRDKRNLGARR-LQTELIRLHKIHL 99
            + T++                      L+ + ++    R + +R  + T   RL ++  
Sbjct: 69  DEATEDRILAYSLEFPTHGPVRVAQQLVLQGVQVSSGGVRGVWSRNGMLTRHERLLRLER 128

Query: 100 STATLHKVLSEASVKPIVTYRRKKDFQRYERPIPGDRVQMDT-----CKIAPGIYQYTAI 154
                   L++  V+ +  +  +   +  E    GD V +DT      K    IY  +AI
Sbjct: 129 HVRDTGIALNDDQVRTLERFSPEFRERHIETRCSGDLVAVDTFFVGTLKGVGKIYLQSAI 188

Query: 155 DDCSRYRVLRCYSRRTAANTVDFIDCVV----EEMPFPIQRIQTDRGREFFA----EKVQ 206
           D  SRY   R Y+ +     V  ++  V    EE   P+  + +D GREF         +
Sbjct: 189 DCHSRYAFGRLYTSKLPVTAVHMLNESVLPFFEEHDTPVVTVLSDNGREFCGRPDRHPYE 248

Query: 207 KQLMIYGIKFRPNKPGSPHLNGKVERSQKTDKSEFYPTIDVSVGLQELDLLLAEWQHY-- 264
             L +  I+ R  +   P  NG VER  +T   E +         + LD + A+   Y  
Sbjct: 249 LFLQLENIEHRTTRVRRPQSNGFVERLHRTLLDEHFRIQGRKNWYESLDEMQADLDAYLR 308

Query: 265 -YNWERPHS--SLNGLTPIDRITEISDQTPLSEEVSQNY 300
            YN ER H   +++G TP     +   +    E+   +Y
Sbjct: 309 HYNHERAHQGRNMSGRTPYQAFLDSRPEGQPKEDNEGHY 347