Pairwise Alignments

Query, 325 a.a., IS481 family transposase ISVch1 from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 52.4 bits (124), Expect = 1e-11
 Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 47/271 (17%)

Query: 38  WA---KRYKQ---CGIAGLESQ--SRRPHSSPDTKLTDELRALILTMRDKRNLGARRLQT 89
           WA   K Y Q   C +AG++ +   RR     DT+L   ++ L     ++R  G RRL  
Sbjct: 3   WAMKTKGYNQRRACALAGIDPRVYRRRSKRLADTELRVRMKELA---SERRRFGYRRLHM 59

Query: 90  ELIRLHKIHLSTATLHKVLSEASVKPIVTYRRKKDFQRY---ERPI-----PGDRVQMDT 141
            L++     ++   L+++  +  +    T R++   +R      P+     P  R  +D 
Sbjct: 60  -LLKREGWEVNWKKLYRLYRDEGL----TVRKRGGRKRAVGTRTPMAIPQGPNQRWSLD- 113

Query: 142 CKIAPGIYQYTAIDDCSRYRVLRC---YSRRTAANTVDF----------IDCVVEEMPFP 188
                  +   A++D  R+RVL     +SR   A  VD           +D + E   +P
Sbjct: 114 -------FMSDALEDGRRFRVLNVIDDFSRECLAAVVDTSISGARVARELDRIAELRGYP 166

Query: 189 IQRIQTDRGREFFAEKVQKQLMIYGIKFRPNKPGSPHLNGKVERSQKTDKSEFYPTIDVS 248
              + +D G E  +  + K      + +    PG P  NG VE      + E      + 
Sbjct: 167 CL-VVSDNGTELTSNAMLKWQEDRKVDWHYIAPGKPMQNGLVESFNGRMREECLNE-HLF 224

Query: 249 VGLQELDLLLAEWQHYYNWERPHSSLNGLTP 279
             L+    ++A W+  YN  RPHSSL+GLTP
Sbjct: 225 PSLRHACRMIAAWRDDYNHHRPHSSLDGLTP 255