Pairwise Alignments

Query, 456 a.a., type II toxin-antitoxin system HipA family toxin from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  395 bits (1015), Expect = e-114
 Identities = 215/463 (46%), Positives = 295/463 (63%), Gaps = 18/463 (3%)

Query: 4   MEELTVQAFIRGEWIDIGIISFPKSSQHNFRVTELNYLSDYALEHYDKDDFHAVSLNHPV 63
           M+ LTVQ  I GEW D+ ++ F    +       LNY  ++   ++ +    AVS++ PV
Sbjct: 1   MQILTVQMNIAGEWRDVAVVGFYAPEKGTGGPCVLNYDIEHVTSYFHQFAQTAVSVSLPV 60

Query: 64  SFIFDDMGKPGWLKFLDDIMPSGASRRYWVKHLDIEDLSSDEQDYVLLKFGTMSPIGNLR 123
             I   +  P W +FL+DIMP+G+SR YWVK L ++D+ + E+D+ LLK+GT++PIGNLR
Sbjct: 61  DNI--PLRSPHWHRFLEDIMPAGSSRDYWVKRLGLQDMPNLERDFQLLKYGTIAPIGNLR 118

Query: 124 IKDSLPERYEVADNLYFSVDDVKNRAGDFLDYAQQRGAAAGGATGAGGEAPKLILRCGFD 183
           IK+S+PE+ + +  + FS+ DV     DF++YAQ RGAAAGGA+GAGG APKL++R    
Sbjct: 119 IKESVPEKAKKSLPVTFSIADVSELQIDFIEYAQSRGAAAGGASGAGGAAPKLLVRLNEQ 178

Query: 184 HGSGSEKIWIDPYQDDNSSHDLHYLVKYPRGSRSTIDCNILRAEFYFYHELTEMGVETIS 243
            G     +WID +QDD  + D  YLVK+PRG ++T+D +ILRAE++FYHELT++G ETIS
Sbjct: 179 QG-----VWIDTFQDDPRNLDQPYLVKFPRG-KTTLDSDILRAEYHFYHELTQLGFETIS 232

Query: 244 TDGMRLEEGLNYPSLWLPRFDVQIIDQQIERFGMESVYSILNKGAGVTLDHETTIRTLIE 303
            + M+L E    PSLWLPRFD  +    +  +GMESVY+IL +     L H   IR L+ 
Sbjct: 233 VESMKLIEVERGPSLWLPRFDYGVEAGAMVSYGMESVYAILGEPTAKPLLHADVIRRLLA 292

Query: 304 KITESNMVKHQGYRFDTQA----------FVIEWVKRDLLNILFGNSDNHGRNTSFLKGD 353
           +  +     +     D +A          FV+EWV+RDLLNI FGNSDNHGRNTSF+K  
Sbjct: 293 EFNKKENYGNTRTPLDVEAGLEGKSGIEAFVVEWVRRDLLNIAFGNSDNHGRNTSFIKHG 352

Query: 354 GVIKLAPIYDFAPMKADPAGIPRTTKWKAPLEVGGTYDFVGIADTLSDLVPKEMLLKELA 413
             ++LAPIYDFAPMKAD   I RT  W   +E+GG Y+F  IA+ LSDL+    L+  L 
Sbjct: 353 NRVQLAPIYDFAPMKADYEMITRTFTWGEGMELGGVYNFPAIAEHLSDLLSPNDLMSALN 412

Query: 414 ITASKCVGLKQRLALRGVPEQILEMPAVGLNYLSEKLTKWGLL 456
            TA + +GL+ RL  RGVPE IL    +G   L  ++ +WGLL
Sbjct: 413 ETAVRLLGLELRLRQRGVPESILAHSGIGFATLEARMQQWGLL 455