Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 932 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Pseudomonas stutzeri RCH2

 Score = 78.6 bits (192), Expect = 2e-18
 Identities = 98/378 (25%), Positives = 155/378 (41%), Gaps = 57/378 (15%)

Query: 241 LVVLATGMGKT--WLAAFDALQT--QSTKVLFVAHREEILLQAEKTFCQLIPNAKTGLYN 296
           L+V+ATG GKT   +A  DAL     + +VLF+  R  +  QA  TF + +PN     + 
Sbjct: 183 LLVMATGTGKTRTCIAMVDALMRAGHAERVLFLVDRIALREQALATFKEHLPNEPR--WP 240

Query: 297 GVTQNTQAMLLFASVATIGKQNHLQRFAADH-----FDYIVVDEFHHAAARSYRNLLTYF 351
            V +   A      VAT     ++ R    H     FD+IVVDE H +   +Y  +L YF
Sbjct: 241 NVGEKLIAKDRRIYVATYPTMLNIVRDDVQHLSPHFFDFIVVDESHRSIYNTYGEILDYF 300

Query: 352 KPKFLLGLTATPERSDQADILSL--CDSNL-----VFE--------------------RN 384
           K    LGLTATP      +   L  C+  L      FE                    R 
Sbjct: 301 K-TITLGLTATPTDIIDHNTFQLFHCEDGLPTFAYTFEEAVNRVPPYLCNFQVMKIQTRF 359

Query: 385 LVHGIDEKILVPFDYHGIYDQAVNYQEIPWRNGKFDPDSLD---NALATQRRAEHVYQHW 441
            + GI ++ +   D   +  Q  + +EI +   + +   ++   N L  +   E   +  
Sbjct: 360 QMEGISKRTISLEDQKKLILQGKDIEEINFEGTQLEKQVINKGTNTLIVREFMEECIKDG 419

Query: 442 HQKKQTRTLAFCVSKKHADFMAEFC------LSKGIKAIAVYSDSKVRRNQAL--QWLDS 493
           +     +T+ FC SK HA  + E            +  + V  D +V     L  Q+ ++
Sbjct: 420 NGVLPGKTIFFCSSKAHARRIEEIFDKLYPQYHGELAKVLVSDDPRVYGKGGLLDQFTNN 479

Query: 494 GKIDILFSVDLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLR-------RSIETQKS 546
               I  SVD+ + G D+  I  ++  +P  S   F Q +GRG R       +   T+K 
Sbjct: 480 DMPRIAISVDMLDTGIDVREIVNLVFAKPVYSYTKFWQMIGRGTRLLEASKPKPWCTEKD 539

Query: 547 KLVVIDFIGNHDSFLNRP 564
             +++D   N + F  +P
Sbjct: 540 VFLILDCWDNFEYFKLQP 557