Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 579 a.a., type III restriction enzyme, res subunit (RefSeq) from Shewanella loihica PV-4

 Score = 72.0 bits (175), Expect = 1e-16
 Identities = 88/342 (25%), Positives = 143/342 (41%), Gaps = 36/342 (10%)

Query: 241 LVVLATGMGKTWLAAFDALQTQSTKVLFVAHREEILLQAEKTFCQLIPNAK---TGLYNG 297
           L+VL TG GK+ + A +  +    + L + H +E++ Q  +    L   A     GL   
Sbjct: 26  LLVLPTGAGKSIVIA-ELARIAKGRTLVLTHVKELVAQNAEKVGLLTDEASIFSAGLKQK 84

Query: 298 VTQNTQAMLLFASVATIGKQNHLQRFAADHFDYIVVDEFHHAAARS---YRNLLTYFKPK 354
            T+N   +    S     KQ        + +  +++DE H  +      Y+ LL++ + K
Sbjct: 85  STRNKTVVASIQSAVRNPKQFD------EPYSLVIIDECHRVSNEKESQYQQLLSHLRTK 138

Query: 355 F----LLGLTATPERSDQADILSL------------CDSNLVFERNLVHGIDEKILVPFD 398
                LLGLTATP R     I                  + +FE  +   I +  L P  
Sbjct: 139 NSKLRLLGLTATPYRLGSGWIYRYHYHGKIGNTEQPVFEHCIFELPMRPLIKQGFLTPPK 198

Query: 399 YHGIYDQAVNYQEI-PWRNGKFDPDSLDNALATQRRA-EHVYQHWHQKKQTR--TLAFCV 454
                    ++ E+ P  NG+++   +D+ L    RA + + +   Q   TR  T+ F  
Sbjct: 199 VLDGLSAQYDFSELSPNANGEYNEAEVDSLLHHAGRATKAIVEQIKQLTNTRAGTIIFAA 258

Query: 455 SKKHADFMAEFCLSKGIKAIAVYSDSKVRRNQALQWLDSGKIDILFSVDLFNEGTDLPAI 514
           + +HA  +     S     I   + S+  R+  +      ++  L +V +   G D P +
Sbjct: 259 TVRHAKEIMTLLDSPEAGLITADTPSQ-ERDAIIDAFKRRELSYLVNVAVLTTGFDAPHV 317

Query: 515 DTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFIGN 556
           D I +LRPT S  LF Q +GRGLR  I   K   +VID+  N
Sbjct: 318 DLIAILRPTASVSLFQQMVGRGLR--ICEGKRDCLVIDYAAN 357