Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1188 a.a., type I restriction-modification system, R subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.5 bits (158), Expect = 2e-14
 Identities = 98/398 (24%), Positives = 170/398 (42%), Gaps = 71/398 (17%)

Query: 222 QVEALTALNATRAQGFSRGLVVLATGMGKTWLAA---FDALQTQS-TKVLFVAHREEILL 277
           Q +A+ A+ +  AQ  ++ L+ +ATG GKT       +  L+ +   ++LF+  R  +  
Sbjct: 463 QQKAIAAVESALAQDNTQCLLAMATGTGKTRTIIGLMYRFLKAERFRRILFLVDRTALGE 522

Query: 278 QAEKTF--CQLIPN-AKTGLYN-----GVTQNTQAMLLFASVATIGKQNHLQRFAA--DH 327
           QA  +F   +L  N   + +YN      +    +  +  A+V  + K+  +       D 
Sbjct: 523 QACDSFDEAKLEQNKVLSSIYNIAELGDMKSEAETRIQVATVQAMVKRIFMSDNPPPLDE 582

Query: 328 FDYIVVDEFHHAAA-------------------RSYRNLLTYFKPKFLLGLTATPERSDQ 368
           FD I+VDE H   A                    SYR +L YF     +GLTATP +   
Sbjct: 583 FDCIIVDEAHRGYALDQQMTEGELATRDASQYLSSYRRVLDYFDA-VRIGLTATPAKHT- 640

Query: 369 ADILSLCDSNLVFERNLVHG---IDEKILVPFDY----HGI-YDQAVNYQEIPWRNG--- 417
           ++I         + R  V G   ID +  + ++     HGI +++      I  + G   
Sbjct: 641 SEIFGKPVYTYSY-REAVAGDWLIDHEPPIRYETLLNKHGIKFEKGETVTSINTQTGEIE 699

Query: 418 --------KFDPDSLDNALATQRRAEHVYQHWHQKKQT----RTLAFCVSKKHADFMAEF 465
                   KFD +S +  + T+   E + Q   ++       +T+ FC +  HAD M + 
Sbjct: 700 TADLEDELKFDVESFNKRVITESFNEVICQELIKELDPFGDEKTMIFCATDVHAD-MVKR 758

Query: 466 CLSKGI----------KAIAVYSDSKVRRNQAL-QWLDSGKIDILFSVDLFNEGTDLPAI 514
            L K             A+A  +    + +Q + Q+ +    +I  +VDL + G D+P I
Sbjct: 759 LLDKAFLDMYGDDYNQAAVAKITGQSDKVSQLIRQYKNERYPNIAITVDLLSTGIDVPKI 818

Query: 515 DTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVID 552
             ++ LR  +S+IL+ Q +GR  RR  +  K+   + D
Sbjct: 819 CHLVFLRRVKSRILYEQMMGRATRRCDDIGKTAFKIYD 856