Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella oneidensis MR-1

 Score = 64.7 bits (156), Expect = 2e-14
 Identities = 86/366 (23%), Positives = 156/366 (42%), Gaps = 43/366 (11%)

Query: 222 QVEALTALNATRAQGFSRGLVVLATGMGKTWLAAFDALQTQSTKVLFVAHREEILLQAEK 281
           Q +A+ A      +     ++VL TG GK+ + A +  +    +VL + H +E++ Q  +
Sbjct: 15  QQQAVDAAIVHFKKSTDSAVLVLPTGAGKSIVIA-ELARIARGRVLVLTHVKELVAQNAQ 73

Query: 282 TFCQLIPNAKTGLYNGVTQNTQAMLLFASVATIGKQNHLQRFAADHFDYIVVDEFHHAAA 341
               L   A         +++    + AS+ +  +   L +F  + F  +++DE H  + 
Sbjct: 74  KVGLLTTEASIYSAGLNKKSSVGKTVVASIQSAARA--LGQFN-EPFSLVIIDECHRVSL 130

Query: 342 RS---YRNLLTYFKPKF----LLGLTATPER----------------SDQADILSLCDSN 378
                Y+ LL++ + +     LLGLTATP R                S +  I   C   
Sbjct: 131 EKTSQYQQLLSHLQQRNPQLKLLGLTATPYRLGTGWIYKRHYHGKVGSPELGIFEQCIFE 190

Query: 379 LVFERNLVHGIDEKILVPFDYHGIYDQAVNYQEIPWRNGKFDPDSLDNAL-----ATQRR 433
           L     +  G    +  P  + G+  Q    Q    +NG++    +++ L     AT   
Sbjct: 191 LPIRPLIKQGY---LTAPTLFDGLSAQYDFSQIKANKNGEYPEAQVNDLLNHAGRATTAI 247

Query: 434 AEHVYQHWHQKKQTRTLAFCVSKKHADFMAEFCLSKGIK---AIAVYSDSKVRRNQALQW 490
            + + +  H ++    + F  + +HA+ +    L+K  +   AI         R++ ++ 
Sbjct: 248 VKQLIELSHHRQGI--IIFAATVRHAEEIVSQ-LNKEHREQTAIVTAQTPDNERDELIER 304

Query: 491 LDSGKIDILFSVDLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVV 550
             + ++  L +V +   G D P +D I +LRPT S  LF Q +GRGLR  I   K   +V
Sbjct: 305 FKARELKFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLR--ICEGKKDCLV 362

Query: 551 IDFIGN 556
           ID+  N
Sbjct: 363 IDYAAN 368