Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 987 a.a., helicase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1481 bits (3834), Expect = 0.0
 Identities = 734/985 (74%), Positives = 828/985 (84%), Gaps = 15/985 (1%)

Query: 2   MSDRQSFLYSGHKLSSGGANDPLLPRLVQAINHATEIEISVSFIQPSGLDLLFDPLFDAV 61
           M ++Q+ LYSG KLS GGANDPLLPRL+QAINHA+EIEISVSFIQPSGLDLLFDPL DA+
Sbjct: 1   MIEQQTSLYSGKKLSYGGANDPLLPRLIQAINHASEIEISVSFIQPSGLDLLFDPLLDAL 60

Query: 62  QSGAQVKLLTSDYLSITHPVALRRLMLLTERGAQCRVFECGQHSFHMKSYIFVRCEQGEI 121
           QSGA +KLLTSDYL I+HPVALRRLMLL ERGAQC++F CGQ SFHMKSYIF+R EQ EI
Sbjct: 61  QSGASLKLLTSDYLCISHPVALRRLMLLAERGAQCKIFVCGQQSFHMKSYIFIRSEQDEI 120

Query: 122 LEGCAWIGSNNISKTALLDSHEWALRHDFEPPETSAAALEFLHIRQQFASIFNHTNSKDL 181
           +EGCAWIGSNNISKTALL SHEWALRHDFE P TS AALEF HIR+QF +IFNHT S+ L
Sbjct: 121 IEGCAWIGSNNISKTALLHSHEWALRHDFELPLTSPAALEFAHIRKQFEAIFNHTESQVL 180

Query: 182 THTWIDHYLERYQQAKKQHGMPILA-DSQDEQSEPPAPNAVQVEALTALNATRAQGFSRG 240
           TH WID YL RYQ  K+Q G+  ++   + E  EPP PNAVQ+EAL AL A+R QGF+RG
Sbjct: 181 THVWIDSYLSRYQHTKQQRGIAAVSLYEEQEHIEPPTPNAVQMEALAALKASREQGFTRG 240

Query: 241 LVVLATGMGKTWLAAFDALQTQSTKVLFVAHREEILLQAEKTFCQLIPNAKTGLYNGVTQ 300
           LVVLATGMGKTWLAAFD LQT + KVLFVAHREEIL+QAEKTF QL+P AKTG YNG+ Q
Sbjct: 241 LVVLATGMGKTWLAAFDTLQTAAKKVLFVAHREEILIQAEKTFNQLVPEAKTGSYNGLNQ 300

Query: 301 NTQAMLLFASVATIGKQNHLQRFAADHFDYIVVDEFHHAAARSYRNLLTYFKPKFLLGLT 360
           + +   LFASVAT+GK  HLQRFAADHFDYIVVDEFHHAAA+SYR LL YF+P+FLLGLT
Sbjct: 301 DEKTDYLFASVATLGKLQHLQRFAADHFDYIVVDEFHHAAAKSYRQLLAYFRPQFLLGLT 360

Query: 361 ATPERSDQADILSLCDSNLVFERNLVHGIDEKILVPFDYHGIYDQAVNYQEIPWRNGKFD 420
           ATPERSDQADILSLCD+NLVFERNLVHGID K+LVPFDYHGIYDQAVNYQ+IPWRNGKFD
Sbjct: 361 ATPERSDQADILSLCDNNLVFERNLVHGIDGKLLVPFDYHGIYDQAVNYQDIPWRNGKFD 420

Query: 421 PDSLDNALATQRRAEHVYQHWHQKKQTRTLAFCVSKKHADFMAEFCLSKGIKAIAVYSDS 480
           PD+LDNALATQRRA HV  HW Q KQ+RTLAFCVSKKHADFMA++  SKGI AIAVYSDS
Sbjct: 421 PDALDNALATQRRATHVLHHWQQSKQSRTLAFCVSKKHADFMAKYFTSKGINAIAVYSDS 480

Query: 481 KVRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLRRS 540
           KVRRNQALQWL  G I+++FSVDLFNEGTDLPAIDTILM+RPTESKILFLQQLGRGLR S
Sbjct: 481 KVRRNQALQWLAQGSIEVIFSVDLFNEGTDLPAIDTILMIRPTESKILFLQQLGRGLRLS 540

Query: 541 IETQKSKLVVIDFIGNHDSFLNRPTTLYNVSHLKDALAK-HQQQALPDGCHVTFDITLLN 599
            +TQK KLVV+DFIGNH+SFLNRPTTLYN+  L++ L   +Q  ALP GCHV FD+ L+ 
Sbjct: 541 HQTQKQKLVVLDFIGNHESFLNRPTTLYNLGSLREVLRNLNQVNALPKGCHVNFDLELIE 600

Query: 600 FWQQLTRKMRFSVQDEYQQLAHQLAHRPTASEFFYHGIEISKVRKQAQSWFHLVASQEND 659
           FWQ L +++RFSVQ+EYQQLA+QLAHRPTASEF++HG+E++KVR+QAQSWFHLVASQE +
Sbjct: 601 FWQNLVKRLRFSVQEEYQQLANQLAHRPTASEFYHHGVEMNKVRQQAQSWFHLVASQEAE 660

Query: 660 PELAEIVTRYGDFLLHGIESTGMSKSFKAILLEALLELDGLRTPPTLATLAECSYTVIAR 719
           P   ++VTRYGDFLLHG+E+T M+KSFKAILLEALLELDGLR PPTLA LAE S+ V  R
Sbjct: 661 PCFTDMVTRYGDFLLHGVETTTMTKSFKAILLEALLELDGLRNPPTLAALAERSHAVFCR 720

Query: 720 RPDLMAEDLTENAKQFKAADKDWLNYWRNNPIKAFTNKATKQATWFSIDSQQRFVANFDI 779
           RPDLMA++LT+ AKQFKA DK WL YW+NNPI AFT   +K   WF ID++QRFVA F I
Sbjct: 721 RPDLMAQELTQAAKQFKAQDKGWLTYWKNNPINAFTKANSKTPPWFQIDAKQRFVATFTI 780

Query: 780 REQDLERLHDCIQELVDLRLAEYAQRPKQH-------------KENLIKAKSKAAVISLI 826
            E D+E LHD +QELVDLRLA+Y QRP+Q              +     AK  A V+   
Sbjct: 781 DEADIELLHDWVQELVDLRLAQYVQRPQQKATVNTSNASTNNTRNTNTTAKPLAQVLPFE 840

Query: 827 PEQKTIGTPIPFYPELKIACGHFKRGSEREVQTYFVPDGYGLLDPTRHFVSPASGNSMNG 886
               T GT +PFYPELKIACGHFK GS +  + Y VP GYGLLDP RHFV+PASGNSMNG
Sbjct: 841 STPSTEGTLLPFYPELKIACGHFKHGSAQNAEHYCVPSGYGLLDPKRHFVAPASGNSMNG 900

Query: 887 GKNPIQDGDLLLLEWVTPSSAGSISNLTMAIETQDETGDNQYLLRVVRKIAPNQYELQAQ 946
           GKNPIQDGDLLLLEWVTP SAGSISNLTMAIETQD+TGDNQYLLRVVRK APNQYEL AQ
Sbjct: 901 GKNPIQDGDLLLLEWVTPESAGSISNLTMAIETQDDTGDNQYLLRVVRKTAPNQYELHAQ 960

Query: 947 NPSYPNMPATDAMKTFARLKAVIKN 971
           NP+Y  M ATD+MKTFARLKAV+++
Sbjct: 961 NPAYQTMLATDSMKTFARLKAVLES 985