Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 982 a.a., helicase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  256 bits (655), Expect = 4e-72
 Identities = 206/642 (32%), Positives = 311/642 (48%), Gaps = 64/642 (9%)

Query: 6   QSFLYSGHKLSSGGANDPLLPRLVQAINHATEIEISVSFIQPSGLDLLFDPLFDAVQSGA 65
           QS L+ G   S+ G +  L   L + I  + +I   VSFI+ +G+ +    L +  +SG 
Sbjct: 54  QSELFCG---SNAGLS--LESELKREIRSSDKIYWLVSFIKWAGIRIFKHELEEFTRSGK 108

Query: 66  QVKLLTSDYLSITHPVALRRLMLLTERGAQCRVFECGQHSFHMKSYIFVRCEQGEILEGC 125
           +++++T+ Y+  T   A+  L  L     +   +   +   H KSY+F+R          
Sbjct: 109 ELRIITTSYMGATDAKAVEFLACLPNTQVKLS-YNTKRERLHAKSYLFLRNTGFHT---- 163

Query: 126 AWIGSNNISKTALLDSHEWALRHDFEPPETSAAALEFLHIRQQFASIFNHTNSKDLTHTW 185
            +IGS+N+S +AL    EW L+             E  HI  +  S F           W
Sbjct: 164 GYIGSSNLSHSALTSGLEWNLK---------ITTQEIPHIIDKSLSTFETY--------W 206

Query: 186 IDHYLERYQ--QAKKQHGMPILADSQDEQSEPPA------PNAVQVEALTALNATRA-QG 236
             +  E +    + K+     L +++   +EP +      P A Q E L  L   R+  G
Sbjct: 207 ESNEFELFSGDASSKEKLNNALKEAKGSSTEPSSFHFDIKPFAHQREILEQLAVERSVHG 266

Query: 237 FSRGLVVLATGMGKTWLAAFDAL----QTQSTKVLFVAHREEILLQAEKTFCQLIPNAKT 292
             + L+V ATG GKT ++AFD      Q      LFVAHR+EIL QA   +  ++ N + 
Sbjct: 267 RFKNLIVAATGTGKTIISAFDFARFYKQHPEANFLFVAHRQEILQQALGAYRGVLKNNQF 326

Query: 293 G-LYNGVTQNTQAMLLFASVATIGKQNHLQRFAADHFDYIVVDEFHHAAARSYRNLLTYF 351
           G L+           LFAS+ ++  Q      AAD +DYIV+DE HH AA SYR LL +F
Sbjct: 327 GELWVAEHTPNSYKHLFASIQSLNLQLDNLPLAADFYDYIVIDEVHHVAASSYRGLLEHF 386

Query: 352 KPKFLLGLTATPERSDQADILSLCDSNLVFERNLVHGIDEKILVPFDYHGIYDQAVNYQE 411
           +P  L+GLTATPER D  DIL+     +  E  L   I+++ L PF Y  I D+  + + 
Sbjct: 387 EPTILVGLTATPERHDGVDILADFCGVIAAEIRLPEAINQRHLCPFQYFAIDDET-DLRN 445

Query: 412 IPWRNGKFDPDSLDNALA-TQRRAEHVYQHWHQK----KQTRTLAFCVSKKHADFMAEFC 466
           + W  G++D   L N      +R   + +   +        + LAFCVS++HA++MA+  
Sbjct: 446 LNWSRGRYDVAELSNLYTHNDQRVTRIIRSLAETVTDIDSIKALAFCVSREHAEYMAKKF 505

Query: 467 LSKGIKAIAVYSDSKVRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLRPTESK 526
              GI A  + SD+   R++  Q L SGK+ IL  VD+FNEG D+P +DT+L LRPTES 
Sbjct: 506 NLSGISADVLTSDNSEERHEKRQSLVSGKLSILCVVDIFNEGVDIPEVDTLLFLRPTESL 565

Query: 527 ILFLQQLGRGLRRSIETQKSKLVVIDFIGNHDSFLNRPTTLYNVSHLKDALAKHQQQALP 586
            +FLQQLGRGLR  +   K    ++DF+GN           Y+ S    AL     Q++ 
Sbjct: 566 TIFLQQLGRGLR--LTDDKQCCTILDFVGN-------SRDEYDFSQKFRALVGKTNQSIK 616

Query: 587 DGCHVTFDITLLNFWQQLTRKMRFSVQDEYQQLAHQLAHRPT 628
           D         +LN +  L    R  ++++ Q +  +   R T
Sbjct: 617 D--------EILNDFPHLPLGCRIELEEKAQSMILRNISRAT 650