Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 938 a.a., type III restriction protein res subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  484 bits (1247), Expect = e-141
 Identities = 279/639 (43%), Positives = 397/639 (62%), Gaps = 37/639 (5%)

Query: 11  SGHKLSSGGANDPLLPRLVQAINHATEIEISVSFIQPSGLDLLFDPLFDAVQSGAQVKLL 70
           SG +L++GG  DPLLP L + ++ A  ++++++F   SG+ LL     + +  G +++++
Sbjct: 58  SGARLTTGG-RDPLLPLLAERLDTAQSVDLAIAFAMDSGVALLEPWFRELLARGGRLRIV 116

Query: 71  TSDYLSITHPVALRRLMLLTERGAQCRVFECGQHSFHMKSYIFVRCEQGEILEGCAWIGS 130
             DYL  T P AL RL+ L   GA+  VFE G  SFH K+++F   +      G A +GS
Sbjct: 117 VGDYLDTTDPTALARLLDL--EGAELFVFETGGLSFHPKAWLFRAADA----RGAAIVGS 170

Query: 131 NNISKTALLDSHEWALRHDFEPPETSAAALEFLHIRQQFASIFNHTNSKDLTHTWIDHYL 190
           +N+S++AL D  EW L H  +  ++  AA + L  R +          K LT  W+D Y 
Sbjct: 171 SNLSQSALTDGVEWNL-HSEDAADSVGAAFKDLLARPEV---------KPLTAAWVDAYA 220

Query: 191 ERYQQAKKQHGMP-ILADSQDEQSEPPAPNAVQVEALTALNATRAQGFSRGLVVLATGMG 249
           +R    ++   MP   A    E+  PP P+ +Q EAL AL  +R++G   GLVVLATG+G
Sbjct: 221 KR----RRARPMPEFTARVVAEEGPPPEPHTIQQEALAALAQSRSKGHRAGLVVLATGLG 276

Query: 250 KTWLAAFDALQTQSTKVLFVAHREEILLQAEKTFCQLIPNAKTGLYNGVTQNTQAMLLFA 309
           KTWLAAFD ++  + ++LFVAHR+EIL QA   F ++ P+AK G Y G  +   A +LFA
Sbjct: 277 KTWLAAFDTIRAMAGRILFVAHRDEILTQAMAAFRKVRPDAKLGRYTGAEKEADAEILFA 336

Query: 310 SVATIGKQNHLQRFAADHFDYIVVDEFHHAAARSYRNLLTYFKPKFLLGLTATPERSDQA 369
           SV T+G+  HL++F  DHFDYIVVDEFHHAAAR+Y+ L+ +F P FLLGLTATP+R+D A
Sbjct: 337 SVQTLGRIGHLRQFDRDHFDYIVVDEFHHAAARTYQKLIEHFTPGFLLGLTATPDRTDGA 396

Query: 370 DILSLCDSNLVFERNLVHGIDEKILVPFDYHGIYDQAVNYQEIPWRNGKFDPDSLDNALA 429
           D+L LC  NLV+E +L  GID   L PF Y G+ D  V+Y +IPWR+G+FDP +LD ALA
Sbjct: 397 DLLGLCSENLVYECDLFRGIDAGHLSPFHYFGVPDD-VDYAQIPWRSGQFDPTALDAALA 455

Query: 430 TQRRAEHVYQHWHQKKQTRTLAFCVSKKHADFMAEFCLSKGIKAIAVYS-DSKVRRNQAL 488
           T+ RA +    + ++     + FC S +HAD+MAE+  + G+ AIAV+S  S   R  +L
Sbjct: 456 TEARALNALDQYRKRASGPAIGFCCSVRHADYMAEYFRTAGLNAIAVHSGQSSAPRASSL 515

Query: 489 QWLDSGKIDILFSVDLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLRRSIETQKSKL 548
             L  G+IDILF+VD+FNEG D+P I T+LMLRPTES I++LQQLGRGLRR    +   L
Sbjct: 516 AALGRGEIDILFAVDMFNEGVDVPEIGTVLMLRPTESAIIWLQQLGRGLRR---VEGKVL 572

Query: 549 VVIDFIGNHDSFLNRPTTLY-------NVSHLKDALAKHQQQALPDGCHVTFDITLLNFW 601
            VID+IGNH SFL +  TL        ++S   DAL   + Q +P GC +T+++ +++  
Sbjct: 573 QVIDYIGNHRSFLTKVATLLRAGAGDRSISTKLDALQAGEFQ-MPKGCEITYELQVIDIL 631

Query: 602 QQLTRKMRFSVQDE--YQQLAHQLAHRPTASEFFYHGIE 638
           + L R    + + E  +     +   RPTA E F +G +
Sbjct: 632 RNLLRPKEGAAELEAFFVDFRDRTGIRPTAVEVFRNGFD 670