Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 901 a.a., Type I restriction enzyme EcoKI R protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 70.1 bits (170), Expect = 6e-16
 Identities = 114/486 (23%), Positives = 182/486 (37%), Gaps = 104/486 (21%)

Query: 222 QVEALTALNATRAQGFSRGLVVLATGMGKTWLAAFDALQ----TQSTKVLFVAHREEILL 277
           Q EA+T L  +   G +R L+VLATG GKT+ A   A +    T   +VLF+  R  +  
Sbjct: 158 QYEAVTELEKSFRAGQNRALMVLATGAGKTYTACLAAYRMLSYTPMRRVLFLVDRNNLGK 217

Query: 278 QAEKTFCQLIPNAKTGLYNG------------------VTQNTQAMLLF----------- 308
           QAE  F           +N                   V    Q +  F           
Sbjct: 218 QAEGEFGTFRLTENGDAFNTIFTVNRLRSPSIPSDSNVVISTIQRLFSFLKGEAIEDNDD 277

Query: 309 ------ASVATIGKQNHLQRFAADHFDYIVVDEFHHAAARSYRNLLTYFKPKFLLGLTAT 362
                 A   T+    +L     D+FD I++DE H +   ++R +L YF    L+GLTAT
Sbjct: 278 DDENEPAEEVTLPPNPNLPH---DYFDMIIIDECHRSIYGNWRMVLEYFDTARLVGLTAT 334

Query: 363 PERSDQADILSLCDSNLVFERNLVHGID----------------------EKILVPFDYH 400
           P     A   +    N   E+++V G++                      EK      Y 
Sbjct: 335 PIPETMAFFNNNRIVNYTLEKSIVDGVNVDCRVYRIKTQVTETGGAILEGEKFKEETRYT 394

Query: 401 G-----IYDQAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQ--------T 447
           G        +  NY          +P  +   L+T R  + VY       Q         
Sbjct: 395 GEVKTVSSKETKNYTNKELNRSVINPAQIKLILSTYR--DVVYTELFNDPQRKPNMDYLP 452

Query: 448 RTLAFCVSKKHADFMAEFCLS----KGIKAIAVYSDSKVRRNQAL-QWLDSGKIDILFSV 502
           +TL F +++ HA  + +           + +   + S    N+ + Q+ +     I  + 
Sbjct: 453 KTLIFALNEAHATNIVQIAKEVFGRNDDRFVQKITYSAGDSNELIRQFRNDKDFRIAVTC 512

Query: 503 DLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFIGNHDSFLN 562
            L   GTD+  ++ ++ +R  ES  L++Q  GRG+R   + Q   +    F  + D F  
Sbjct: 513 TLVATGTDVKPLEVVMFMRDVESLPLYIQMKGRGVRTIGDDQLRNVTPNAF--SKDCF-- 568

Query: 563 RPTTLYNVSHLKDA--LAKHQQQALP-DGCHVTFDITLLNFWQQLTRKMRFSVQDEY-QQ 618
                    +L DA  + +H Q   P D    T  ITL    ++++      + DEY ++
Sbjct: 569 ---------YLVDAVGVTEHAQTVAPIDDGPTTKTITLKELLERISHGY---IPDEYLKR 616

Query: 619 LAHQLA 624
           LA  LA
Sbjct: 617 LAATLA 622