Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 677 a.a., excinuclease ABC subunit B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 43.9 bits (102), Expect = 4e-08
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 444 KKQTRTLAFCVSKKHADFMAEFCLSKGIKAIAVYSD-SKVRRNQALQWLDSGKIDILFSV 502
           +K+ R L   ++K+ A+ + E+ L+  ++   ++SD   + R + +  L  G  D+L  V
Sbjct: 442 EKEERVLVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDTLERVKIMDDLRQGVYDVLIGV 501

Query: 503 DLFNEGTDLPAIDTILML 520
           +L  EG DLP +  + +L
Sbjct: 502 NLLREGLDLPEVSLVAIL 519



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 218 PNAVQVEALTALNATRAQGFSRGLVVLATGMGKTWLAAFDALQTQSTKVLFVAHREEILL 277
           P   Q EA+  L     QG     ++  TG GKT+  A + +   +   L ++H + +  
Sbjct: 11  PTGDQPEAIAQLTEGVLQGVPAQTLLGVTGSGKTFTIA-NVIANINKPTLILSHNKTLAA 69

Query: 278 QAEKTFCQLIPNAKTGLY 295
           Q    F    PN     Y
Sbjct: 70  QLYSEFKGFFPNNAVEYY 87