Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 703 a.a., excinuclease ABC subunit UvrB from Bifidobacterium breve UCC2003

 Score = 56.6 bits (135), Expect = 6e-12
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 25/164 (15%)

Query: 381 FERNLVHGIDEKILVPFDYHGIYDQAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQH 440
           +E  L  G+ E+I+ P    G+ D  ++ + +    G+ D D L    A   R E     
Sbjct: 405 YELGLSDGVVEQIIRPT---GLLDPKIDVRPV---KGQID-DLLGEIKARVDRNE----- 452

Query: 441 WHQKKQTRTLAFCVSKKHADFMAEFCLSKGIKAIAVYSD-SKVRRNQALQWLDSGKIDIL 499
                  R L   ++KK A+ + ++ L +GIK   ++SD   +RR + L+ L  GKID++
Sbjct: 453 -------RALVTTLTKKMAEDLTDYLLERGIKVEYLHSDVDTLRRVELLRMLREGKIDVI 505

Query: 500 FSVDLFNEGTDLPAIDTILMLRPTESKIL-----FLQQLGRGLR 538
             ++L  EG DLP +  + +L   +   L      +Q +GR  R
Sbjct: 506 VGINLLREGLDLPEVSLVAILDADKEGFLRSYRSLIQTIGRAAR 549



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 206 ADSQDEQSEPPAPNAVQVEALTALNATRAQGFSRGLVVLATGMGKTWLAAFDALQTQSTK 265
           AD       P  P+  Q +A+T L+     G +  +++ ATG GKT   A+  ++     
Sbjct: 8   ADKPFVVKSPYQPSGDQPQAITELSERIENGENDVVLMGATGTGKTATTAW-LIEKLQRP 66

Query: 266 VLFVAHREEILLQAEKTFCQLIPN 289
            L +   + +  Q    F +L+P+
Sbjct: 67  TLIIEPNKTLAAQLCAEFRELMPD 90