Pairwise Alignments

Query, 979 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 1138 a.a., type III restriction enzyme, res subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 80.1 bits (196), Expect = 8e-19
 Identities = 98/428 (22%), Positives = 179/428 (41%), Gaps = 67/428 (15%)

Query: 189 YLERYQQAKKQHGMPILADSQDEQSEPPAPNAVQVEALTALNATRAQGFSRGLVVLATGM 248
           +L ++Q+ +K+    +  D++       A    Q+E ++ ++ T      + LVV ATG 
Sbjct: 338 HLVKFQRIEKKKLTDVAIDTE------VAGRRYQLETISRVHETFELKRRKALVVQATGT 391

Query: 249 GKTWLAAFDALQTQSTK----VLFVAHREEILLQAEKTFCQLIPNAKTGLYNGVTQNTQA 304
           GKT ++   A      K    +LF+  R+E+  QA+K F Q +      +     +    
Sbjct: 392 GKTRVSIALAKSLMDAKWVKRILFLCDRKELRKQADKAFVQFLGVKPYVVGKSDKKYKDT 451

Query: 305 MLLFASVATI-GKQNHLQRFAADHFDYIVVDEFHHAAARSYRNLLTYFKPKFLLGLTATP 363
             +F  +AT  G     + F   +FD I+ DE H +    + NL  YF     +GLTATP
Sbjct: 452 ARVF--IATYPGMMGIYEDFDVGYFDLIIADESHRSIYNVFGNLFKYF-DCLQVGLTATP 508

Query: 364 ERSDQADILSLCDSNL---VFERNLVHGIDEKILVPFDY---------HGIYDQAVNYQE 411
                    +L D +         L   I E  LVPF+           G+  ++++ ++
Sbjct: 509 VEMVSRSTCNLFDCDYKEPTANYPLEKAIGEGHLVPFEIVTMTTKFMREGMNQRSLSDEQ 568

Query: 412 IPWRNG--------KFDPDSLDNAL----ATQRRAEHVYQHWHQKKQT----RTLAFCVS 455
           I             +F+   +DNA+      ++   ++ ++  + K      +++ F   
Sbjct: 569 IAELEAQGEDPNEFEFESAEIDNAVLNKDTNRKILRNLMENGIKDKDNQLIGKSIIFARK 628

Query: 456 KKHADFMAEFC------LSKGI---------KAIAVYSDSKVRRNQALQWLDSG---KID 497
             HA  + E        LS+G          +A A+    K+   +  +  DS     I 
Sbjct: 629 INHARLLKELFDEMYPELSQGFCEVIHSEEPRAEALIDQFKITEEEKAK--DSSLPDPIT 686

Query: 498 ILFSVDLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLRRSIE-----TQKSKLVVID 552
           +  SVD+ + G D+P++  ++  +P +SK+ F Q +GRG R   +       K++ ++ D
Sbjct: 687 LAISVDMLDTGIDVPSVVNLVFAKPVKSKVKFWQMIGRGTRLCEDLFGKGKHKTRFLIFD 746

Query: 553 FIGNHDSF 560
              N D F
Sbjct: 747 HWNNFDYF 754