Pairwise Alignments

Query, 565 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., two-component system sensor histidine kinase DcuS from Rahnella sp. WP5

 Score =  195 bits (495), Expect = 4e-54
 Identities = 154/551 (27%), Positives = 264/551 (47%), Gaps = 26/551 (4%)

Query: 3   ISLAQFLHTKVCQTLSFQQRVGALLVAMVVIQLSLVAGFFHQTLSETLQDQISTKALIQA 62
           +S +Q  H+     +     V  ++ A++   L +V   +   +S+T +D +  KAL  A
Sbjct: 1   MSDSQQRHSVRKHPMKLSTSVSLMISAVIASVLLVVHMLYFVQVSDTTRDGVKEKALAVA 60

Query: 63  REIATDPNL---IVLIQQNRLAEVQAKIDRLQRISDANFIVIGDANGIRIAHPDEQKIGL 119
           R +A  P     ++L   + +  +Q     +Q+ +D  FIV+ + +GIR +HP+   I  
Sbjct: 61  RTMADLPETKRALLLPPDSNI--IQPIASAVQKRNDLLFIVVTNMDGIRYSHPNADVISH 118

Query: 120 PMQGGDSRRALKEGEYYTSTQKGSLGWAIRGKAAIVAPSGEILGVVSVGYLLDNISSWLR 179
              G D   AL  G    S  KG+L  A+R    +     + +GVV++G  L  ++  + 
Sbjct: 119 HFIGDDINPALL-GNENVSINKGTLDKALRVFTPVYDDHHKQIGVVAIGISLVKVTEQIN 177

Query: 180 VYSYPVIFTVLLLMLLSALGAWIFTRHIKQQMFNMEPEEIAMNLNLQQSILQSVYEGIVA 239
              + +++TVL  +++ ALG +   + +K+ +F +EP EI+     +Q++LQS+ EG++A
Sbjct: 178 KSRWSILWTVLFGLMVGALGTYCLVKLLKRILFGLEPYEISTLFEQRQAMLQSIKEGVIA 237

Query: 240 ISLKGEILSVNAKALNILGIAHQPTHLIGRNVQEFITPTCFFMGASPFGKLAQQNRVSQQ 299
           +  +  +  +N  A               R     +TP    +      +      V ++
Sbjct: 238 VDDQAHVTLINQTARQTF-----------RETAIDVTPDADSLPLIANLRDVLNTGVPRR 286

Query: 300 DELISCNGETLVANRVPINSGQQQIGWVVSFRRRNDFNTLTSQLTQIRQHNDNLRVMSHE 359
           DE I+  G  L++N VP+ +    IG + +FR + + + L  +L+ +  + D+LR  SHE
Sbjct: 287 DEEINFKGRLLLSNTVPVRNNGVIIGAICTFRDKTEVSQLMQRLSGMVNYADSLRERSHE 346

Query: 360 FANRLSTIGGLIQIGAYDEAVKTIRRETAEQQQLIDFIAQTFHPKVIAGLLLGKYSRAKE 419
           F N+L  I GL+ + +Y +    I +     Q  I  +       VIAG LL K +RA +
Sbjct: 347 FMNKLHVILGLLHMKSYAQLEDYILKTANNYQAEIGSLLLKIKSPVIAGFLLSKMNRASD 406

Query: 420 LGLCLEFDPLSHLHQEPQCMTSDELAA---VLGNLLDNAFEATLKNPHSNKTISLLLTDN 476
               L     S L   P     D++AA   VLGNL++NA +A    P     +S+LL   
Sbjct: 407 TRHLLTLSDDSLL---PDNNNEDQVAALITVLGNLIENALDALGDQPDGE--VSVLLHYQ 461

Query: 477 GAELVIEVADNGIGISADIAQTLFLKGVSSKNQEGHGIGLYLVHQFVTQAHGSILIDSAE 536
              L   V+D+G GI  +    +F KGVSSK  +  G+GL+L  Q V    G+I ++S  
Sbjct: 462 NGSLACIVSDDGPGIQPENIDAIFEKGVSSKGDQ-RGMGLFLAKQQVESLGGTITVESEP 520

Query: 537 PQGTIFSIFIP 547
              T F + +P
Sbjct: 521 DVYTQFFVQLP 531