Pairwise Alignments

Query, 565 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1081 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score = 60.1 bits (144), Expect = 4e-13
 Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 28/238 (11%)

Query: 356 MSHEFANRLSTIGGLIQI---GAYDE----AVKTIRRETAEQQQLIDFIAQTFHPKV--- 405
           ++H+F N L+ I G I I   G  D+    A+  +  E A++   +  +   F  K    
Sbjct: 686 IAHDFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAADRGAELTRLLLAFARKQPLR 745

Query: 406 -----IAGLLLGKYSRAKE-LGLCLEFDPLSHLHQEPQCMTSDELAAVLGNLLDNAFEAT 459
                +  LL G  S  +  LG  +E + +         +   +L + L NL  NA +A 
Sbjct: 746 PDETEVNALLSGLQSLLRPTLGEPIEVETVLAPDTWSIYVDRGQLESALVNLAVNARDAM 805

Query: 460 LKNPHSNKTISLLLTDN-----------GAELVIEVADNGIGISADIAQTLFLKGVSSKN 508
            K        S ++ D            G  ++I + D+G GI   I   +F    ++K 
Sbjct: 806 PKGGKLTIETSNVVVDPDLGKRFGDLAPGDYVMIAITDSGCGIPETIRSKVFDPFFTTKE 865

Query: 509 Q-EGHGIGLYLVHQFVTQAHGSILIDSAEPQGTIFSIFIPNRPKTLAAENLPALAERA 565
             +G G+GL +V+ F+ Q+ G I +DS E QGT F +++P     + AE  PA+ + A
Sbjct: 866 VGKGTGLGLSMVYGFIKQSGGHITLDSEEGQGTTFRLYLPRAQIQVDAEAAPAIEQNA 923