Pairwise Alignments

Query, 565 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1288 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 69/243 (28%), Positives = 104/243 (42%), Gaps = 55/243 (22%)

Query: 342 QLTQIRQHNDNLRVMSHEFANRLSTIGGLIQIGAYDEAVKTIRRETAEQQQLIDFIAQTF 401
           QL +I+  ++ L  MSHE    L+ I G  Q+G         +RET E +  I F  Q  
Sbjct: 665 QLARIK--SEFLANMSHEIRTPLNAILGFAQLG---------QRETPESRARIGF--QRI 711

Query: 402 HP--KVIAGLL--LGKYSRAKELGLCLEFDPLS---------------------HLHQE- 435
           H   + + G++  +  +S+ +   + LE  P +                      L  E 
Sbjct: 712 HDAGQHLLGIINDILDFSKIEAGKMKLEMQPTNPCEVVDHVVKLMAASVFQKGLELRVEE 771

Query: 436 ----PQCMTSDEL--AAVLGNLLDNAFEATLKNPHSNKTISLLLTDNGAELVIEVADNGI 489
               P     D L  A VL NLL NA + T        +I+L    +G +L+  + D GI
Sbjct: 772 SDNLPAAFDGDSLRLAQVLLNLLGNALKFT-----DQGSITLREERDGQDLIYSIRDTGI 826

Query: 490 GISADIAQTLFLK-----GVSSKNQEGHGIGLYLVHQFVTQAHGSILIDSAEPQGTIFSI 544
           G++ +    LF       G +S+   G G+GL +  + V    GSI ++S   QGT FSI
Sbjct: 827 GMNREQLGRLFHAFEQGHGGASRRFGGTGLGLTITKRLVEMMGGSIEVESTPGQGTCFSI 886

Query: 545 FIP 547
            IP
Sbjct: 887 RIP 889