Pairwise Alignments

Query, 565 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 994 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 9/112 (8%)

Query: 441 SDELAAVLGNLLDNAFEATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLF 500
           +++   +L NLL NAF    K       I L LT  G +  IEV DNG GI   + + +F
Sbjct: 327 AEKYQRILLNLLSNAF----KFAGDGGAIQLRLTAAGGQARIEVEDNGPGIPEAMREQVF 382

Query: 501 -----LKGVSSKNQEGHGIGLYLVHQFVTQAHGSILIDSAEPQGTIFSIFIP 547
                ++G SS++  G G+GL +V +      GS+ ID+A   G +F++ +P
Sbjct: 383 EPFRQVEGGSSRHHGGTGLGLAIVRELAQLHGGSVRIDAAPSSGALFTLELP 434



 Score = 32.7 bits (73), Expect = 7e-05
 Identities = 82/361 (22%), Positives = 124/361 (34%), Gaps = 57/361 (15%)

Query: 236 GIVAISLKGEILSVNAKALNILGIAHQPTHLIGRNVQEFITPTCFFMGASPFGKL----- 290
           G+  ++  G  L VN +  +I+G   +   L+GR  QE   P   +       +L     
Sbjct: 624 GMAHVAPDGRWLLVNQRLCDIIGYPRE--ELLGRTFQEITHPDDLYSDLEQMHRLLAGEI 681

Query: 291 ---AQQNRVSQQDELISCNGETLVANRVPINSGQQQIGWVVSFRRRND----FNTLTSQL 343
              A + R   +D  +     T+   R    S +  I  V   +RR +     + L + L
Sbjct: 682 DSYAMEKRYRHRDGHLVWINLTVSLVRAADGSPEYFIAAVEDIQRRKEAEGEIHRLNADL 741

Query: 344 --------TQIRQHNDNL----RVMSHEFANRLSTIGGLIQIGAYDEAVKTIRRETAEQQ 391
                    ++R  N  L      +SH+    L  I G  +    D          AE +
Sbjct: 742 ERRVEERTAELRAANRELDSFAHAVSHDLRAPLRAITGFSRAIIEDHGTAL----PAEAR 797

Query: 392 QLIDFIAQTFHPK--VIAGLLLGKYSRAKELGL-----------CLEFDPLSHLHQEPQC 438
           + +D I  +      +I GLL    S  +EL              LE    S        
Sbjct: 798 EFLDHIIASGQQMGALIEGLLTLSRSSREELRRDDIDLSALARRILEELARSEPGHRVAW 857

Query: 439 MTSDELAA---------VLGNLLDNAFEATLKNPHSNKTISLLLTDNGAELVIEVADNGI 489
              D L A         VL NLL NA++ T +   +   I +       ++   +ADNG 
Sbjct: 858 QVEDGLVARGDIRMIGVVLRNLLGNAWKYTART--AAPLIRVHARRQEKQIQFCIADNGA 915

Query: 490 GISADIAQTLFLKGVSSKNQE---GHGIGLYLVHQFVTQAHGSILIDSAEPQGTIFSIFI 546
           G        LF        Q+   G GIGL  V + V +  GSI        G  F   +
Sbjct: 916 GFDMAQVGKLFQPFQRLHRQDEFPGIGIGLATVQRVVHRHGGSIEARGEAGHGASFCFTL 975

Query: 547 P 547
           P
Sbjct: 976 P 976