Pairwise Alignments

Query, 565 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.0 bits (149), Expect = 5e-14
 Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 33/217 (15%)

Query: 339 LTSQLTQIRQHNDNLRVMSHEFANRLSTIGGLIQIG-AYDEAVKTIRRETAEQ-QQLIDF 396
           L ++ TQ +++ + L  ++H     L+ I   + +  A  E V  I R  + Q ++    
Sbjct: 243 LNTEQTQRKRYRNALADLAHSLKTPLAVIKSQVDLSEASSEQVSNISRIISHQLKRAQTA 302

Query: 397 IAQTFHPKVIAGLLLGKYSRAKELGLCLEFDPLSHLHQEPQCMTSDELA----------- 445
            A ++H  +    +  K  R            L+ +++EPQ   S E+A           
Sbjct: 303 AAASWHLGIKVDEVANKLLRT-----------LAKIYREPQINLSGEIADLAVFKGDEAD 351

Query: 446 --AVLGNLLDNAFEATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFLKG 503
              +LGNLLDNA +A      +  T+ L +T +  +L + + D+G GIS  +   +F +G
Sbjct: 352 LTEILGNLLDNACKA------AKSTVKLTVTGDAYQLQLCIEDDGPGISDALQTQIFERG 405

Query: 504 VSSKN-QEGHGIGLYLVHQFVTQAHGSILIDSAEPQG 539
           + + +  +G+GIGL +V   V   +G I +  +E  G
Sbjct: 406 IRADSYHQGNGIGLAIVRDLVDSYNGRISVSRSESLG 442