Pairwise Alignments

Query, 565 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1119 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score = 62.4 bits (150), Expect = 9e-14
 Identities = 82/359 (22%), Positives = 154/359 (42%), Gaps = 59/359 (16%)

Query: 237 IVAISLKGEILSVNAKALNILGIAHQPTHLIGRNVQEFITPTC----FFMGASPFGKLAQ 292
           ++ I + G+++  N  A  + G + +    +G  +++ I P         G   + +  +
Sbjct: 373 LITIDMSGKVIEFNLAATRLFGYSREEA--VGALLEDLIIPEDKQQGHKRGIERYRRTGE 430

Query: 293 QNRVSQQDELIS-CNGETLVANR---VPINSGQQQIGWVVSFRRRNDFNTLTSQLTQIRQ 348
              ++++ EL++ C    L+      VPI  G + + +    R  ++      +L Q ++
Sbjct: 431 GKMLNKRVELLARCKAGNLIPIELEVVPIQLGDEVL-FTAFLRDISERKANEQKLQQAKE 489

Query: 349 HNDN--------LRVMSHEFANRLSTIGGLIQIGAYDEAVK------TIRRETAEQ---- 390
             +         L  MSHE  + L+ I G +++       K       I RE        
Sbjct: 490 QAEQGSKVKSRFLATMSHEIRSPLNAILGGVELLLDSSLSKDQRIHANIAREAGSALLHT 549

Query: 391 -QQLIDFI----------AQTFHP-KVIAGLLLGKYSRAKELGLCLEFDPLSHLHQE-PQ 437
              ++DF           +  F P K++A +L     +A E GL L    +S +++  P+
Sbjct: 550 INDILDFSKIEAGQMVLESHEFEPDKLVAQVLQILEPKAFEKGLEL----VSFVNRNVPR 605

Query: 438 CMTSDE--LAAVLGNLLDNAFEATLKNPHSNKTISLLLTDNG---AELVIEVADNGIGIS 492
            +  D+  L  VL NL+DNA + T        T+ + + DN     +L   V D+GIGIS
Sbjct: 606 TVVGDQQRLRQVLHNLVDNAIKFTASG---TITVEMWIPDNHQTEVQLYCRVTDSGIGIS 662

Query: 493 ADIAQTLF-----LKGVSSKNQEGHGIGLYLVHQFVTQAHGSILIDSAEPQGTIFSIFI 546
           A+    LF     +    + N +G G+GL +  + +T   G+I + S   QG+ F+ ++
Sbjct: 663 AEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELITMMGGTIELQSELGQGSRFTFYV 721