Pairwise Alignments

Query, 227 a.a., response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 3/137 (2%)

Query: 7   VLIVEDETSIADVHSFYLKQTARFRPVGVAQSINEARNMVRILKPKLIFLDNYLPDGRGI 66
           VLIV+D+ +I  + S +L +      V  A+   EA  + R+ +  ++ LD  +P   G+
Sbjct: 8   VLIVDDDEAIRQMLSAFLSKEGL--RVVTARDGLEAIEVFRLQRTDVVLLDIRMPRMNGL 65

Query: 67  EFLKELTHQPQAPDVIFITAASDMETVREAVRCGVFDYLLKPIAYDRVQNSLERYLKYIS 126
           E  K +    +   VI +TA +++ T  +A++ G FDY++KP   + ++  + R L+ I 
Sbjct: 66  EAAKAILEMDRGTAVILMTAFAEVCTAVQAIKDGAFDYVIKPFDLEEIRLLVRRALE-IR 124

Query: 127 SLRANDSVNQRHVDELF 143
           S+RA+    +R + E +
Sbjct: 125 SMRADIVSLRRELSERY 141



 Score = 25.0 bits (53), Expect = 0.003
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 55  FLDNYLPDGRGIEFLKELTHQPQAPDVIFITAASDMETVREAVRCGV 101
           F+   LPDG  I  L+E+  + +   +    A +     R A++ G+
Sbjct: 399 FVSELLPDGEAIRPLREMASEFETRVIRLALARNGGNRARTAIQLGI 445