Pairwise Alignments

Query, 310 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  124 bits (311), Expect = 3e-33
 Identities = 85/279 (30%), Positives = 135/279 (48%), Gaps = 21/279 (7%)

Query: 9   SLHTFMQVAQYTSFSLAAAALHLTTGAISQQMLQLEAQLGFSLFERHSRGVRLTEAGRIL 68
           ++  F   A++ SF+ AA  L +T  A+S Q+  LE  LG  LF R +R + LTE G+  
Sbjct: 10  AVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQSY 69

Query: 69  LTTVQRSYQDIEQTIHSLVPSTERKEIRLKLTPSFAFKWLVPRLEDFYRRHPEIQIQTFA 128
              ++  +  +      L+  +    + + ++PSFA +WLVPRL  F  ++P+I ++  A
Sbjct: 70  FLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKNPDIDVRIKA 129

Query: 129 ----EGALVDSERRDYDLAIDYGALPYPRRDAQLLMEEWLLPVMSTNYLAAHSWLQEDWA 184
               EG+L D    D D+AI YG   +P   A  L  E L+PV S   L  H  L+    
Sbjct: 130 VDSEEGSLTD----DVDVAIYYGQGSWPGLRADKLRNEVLIPVCSPMLLNGHKPLE---- 181

Query: 185 NSEAWQQVVLLHDAMPWANAARDQEWHYWAHQMGIT-LPERRDHYFNRTDMAMSAAEAGV 243
                +   LLHD           +W  W  Q G+T +   +   F+ + + + AA  G 
Sbjct: 182 TPADLKHHTLLHD-------MSRHDWQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQ 234

Query: 244 GIAMARTALLSNELDTGRLVTPFAPIR-AKAGYFLITHQ 281
           G+A+  + L   ++  GRLV PF  +  +K  Y+L+  Q
Sbjct: 235 GVALGYSVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQ 273