Pairwise Alignments

Query, 310 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella loihica PV-4

 Score =  118 bits (296), Expect = 2e-31
 Identities = 81/275 (29%), Positives = 130/275 (47%), Gaps = 13/275 (4%)

Query: 9   SLHTFMQVAQYTSFSLAAAALHLTTGAISQQMLQLEAQLGFSLFERHSRGVRLTEAGRIL 68
           ++  F   A++ SF+ AA  L +T  A+S Q+  LE  LG  LF R +R + LTE G+  
Sbjct: 10  AVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEYLGLKLFRRKNRSLLLTEEGQGY 69

Query: 69  LTTVQRSYQDIEQTIHSLVPSTERKEIRLKLTPSFAFKWLVPRLEDFYRRHPEIQIQTFA 128
              ++  +  +      L+  +    + +  +PSFA +WLVPRL +F   +P+I ++  A
Sbjct: 70  FLDIKDIFVQLADATDRLLARSAIGSLTVSTSPSFAIQWLVPRLANFSENNPDIDVRIKA 129

Query: 129 EGALVDSERRDYDLAIDYGALPYPRRDAQLLMEEWLLPVMSTNYLAAHSWLQEDWANSEA 188
                 S   D D+AI YG   +P   A  L  E L+PV S   L+    L +       
Sbjct: 130 VDDETSSLTDDVDVAIYYGMGNWPGLRADKLRNEVLIPVCSPMLLSGPKPLSQ----PSD 185

Query: 189 WQQVVLLHDAMPWANAARDQEWHYWAHQMGIT-LPERRDHYFNRTDMAMSAAEAGVGIAM 247
            +   LLHD       +   +W  W  Q GI  +   +   F+ + + + AA  G G+A+
Sbjct: 186 LKHHTLLHD-------SSRHDWQAWFRQCGINDINVNQGPIFSHSSLVLQAAAHGQGVAL 238

Query: 248 ARTALLSNELDTGRLVTPFAPIR-AKAGYFLITHQ 281
             + L   ++  GRLV PF  +  +K  Y+L+  Q
Sbjct: 239 GYSVLARPDIKAGRLVCPFPEVLVSKNAYYLVCQQ 273