Pairwise Alignments

Query, 310 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., glycine cleavage system transcriptional activator, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  123 bits (308), Expect = 6e-33
 Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 16/290 (5%)

Query: 9   SLHTFMQVAQYTSFSLAAAALHLTTGAISQQMLQLEAQLGFSLFERHSRGVRLTEAGRIL 68
           ++  F   A++ SF+ AA  L +T  A+S Q+  LE  LG  LF R +R + LTE G+  
Sbjct: 10  AVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQSY 69

Query: 69  LTTVQRSYQDIEQTIHSLVPSTERKEIRLKLTPSFAFKWLVPRLEDFYRRHPEIQIQTFA 128
              ++  +  +      L+  +    + + ++PSFA +WLVPRL  F  ++PEI ++  A
Sbjct: 70  FLDIKDIFIQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNPEIDVRIKA 129

Query: 129 EGALVDSERRDYDLAIDYGALPYPRRDAQLLMEEWLLPVMSTNYLAAHSWLQEDWANSEA 188
                 S   D D+AI YG   +P   A  L  E L+PV S   L     L    +  E 
Sbjct: 130 VDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPL----SKPED 185

Query: 189 WQQVVLLHDAMPWANAARDQEWHYWAHQMGIT-LPERRDHYFNRTDMAMSAAEAGVGIAM 247
            +   LLHD           +W  W  Q GIT +   +   F+ + + + AA  G G+A+
Sbjct: 186 LKHHTLLHD-------MSRHDWQAWFRQCGITDINVNQGPIFSHSSLVLQAAAHGQGVAL 238

Query: 248 ARTALLSNELDTGRLVTPFAPIR-AKAGYFLI---THQATDATQVFCQWL 293
             + L   ++  GRLV PF  +  +K  Y+L+    H        F +W+
Sbjct: 239 GYSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWM 288