Pairwise Alignments

Query, 310 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella sp. ANA-3

 Score =  120 bits (300), Expect = 5e-32
 Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 16/290 (5%)

Query: 9   SLHTFMQVAQYTSFSLAAAALHLTTGAISQQMLQLEAQLGFSLFERHSRGVRLTEAGRIL 68
           ++  F   A++ SF+ AA  L +T  A+S Q+  LE  LG  LF R +R + LTE G+  
Sbjct: 10  AVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEGQSY 69

Query: 69  LTTVQRSYQDIEQTIHSLVPSTERKEIRLKLTPSFAFKWLVPRLEDFYRRHPEIQIQTFA 128
              ++  +  +      L+  +    + + ++PSFA +WLVPRL  F  ++P+I ++  A
Sbjct: 70  FLDIKDIFTQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNPDIDVRIKA 129

Query: 129 EGALVDSERRDYDLAIDYGALPYPRRDAQLLMEEWLLPVMSTNYLAAHSWLQEDWANSEA 188
                 S   D D+AI YG   +P   A  L  E L+PV S   L     L    +  E 
Sbjct: 130 VDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPL----SKPED 185

Query: 189 WQQVVLLHDAMPWANAARDQEWHYWAHQMGI-TLPERRDHYFNRTDMAMSAAEAGVGIAM 247
            +   LLHD           +W  W  Q GI  +   +   F+ + + + AA  G G+A+
Sbjct: 186 LKYHTLLHD-------MSRHDWQAWFRQCGIHDINVNQGPIFSHSSLVLQAAAHGQGVAL 238

Query: 248 ARTALLSNELDTGRLVTPFAPIR-AKAGYFLI---THQATDATQVFCQWL 293
             + L   ++  GRLV PF  +  +K  Y+L+    H        F +W+
Sbjct: 239 GYSVLARPDIKAGRLVCPFQEVLVSKDAYYLVCQQNHAELGKVVAFREWM 288