Pairwise Alignments

Query, 516 a.a., alanine:cation symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., amino acid carrier protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  256 bits (653), Expect = 2e-72
 Identities = 163/462 (35%), Positives = 240/462 (51%), Gaps = 54/462 (11%)

Query: 5   VDFLNGIIWSPALIYLCLGAGLFYSVLTRFVQVRHFFEMWRLLLNNKESSKG------IS 58
           V  LN ++W   ++ + LG GL+ S+  + + +    + +RLL + +   +G      +S
Sbjct: 8   VKSLNSLVWGIPMLVMILGVGLYLSLGLKLLPILKLGKGFRLLWSGRTPGQGKEVKGDVS 67

Query: 59  SFQALAVSLSGRVGTGNIAGVAAAIGFGGPGAVFWMWMVAFFGAATAYAESTLAQIYKE- 117
            F AL  SLS  +GTGNIAGVA AI  GGPGA+FWMW  A  G AT Y+E+ LA  Y+E 
Sbjct: 68  PFNALMTSLSATIGTGNIAGVATAIFVGGPGALFWMWCTALVGMATKYSEAVLAVRYREV 127

Query: 118 EDNGEFRGGPAYYIEKAMGQKWYAWV---FAIATIFACGVLLPGVQSNSIGNAVESAFGS 174
           ++ G + GGP YYI+  +G KW  W+   FA+   FA   +   VQ+NS+ +A+ S FG 
Sbjct: 128 DEKGNYIGGPMYYIKNGLGSKW-TWLGTAFALFGSFAGFGIGNTVQANSVASALTSNFGV 186

Query: 175 GPMIETALGTFSFAKIFTGTVISILLGFIIFGGVKRIASFTQIVVPFMALAYIITAFVII 234
              +             +G V+ +L+G ++ GG+KRIA     +VP M + YI     ++
Sbjct: 187 PAWV-------------SGVVMMVLVGLVLMGGIKRIAIVAGKLVPLMTIFYITAGIAVL 233

Query: 235 LLNIGEVPRIIAMIVGDAFSPMAGVG--------AAIGWGVKRGVYSNEAGQGTGPHAAA 286
           ++   E+P  +++I+  AFSP+A  G         AI  GV RGV+SNEAG G+ P A A
Sbjct: 234 VVYASEIPAALSLIISSAFSPVAAQGGFAGAAVMVAIQMGVARGVFSNEAGLGSAPIAHA 293

Query: 287 AASVEHPAQQGLVQSFSIYIDTLMVCSATAFMILITGAYNVHGAAEGMFLVQNLPADIIA 346
           AA  + P  QGLV     +IDT++VCS T   I+++GA+                     
Sbjct: 294 AAQTKSPVTQGLVGMLGTFIDTIIVCSITGLAIVVSGAWTSG-----------------E 336

Query: 347 SSPAFTQIAVDSALPGIGKPFVAFALFFFAFTTILAYYYIAETNVAYIRRTFKVDGLMFV 406
           +  A T  A   ALP IG   VA AL  FAFTTIL +   +E  V Y+     V     +
Sbjct: 337 NGAALTSYAFSHALP-IGDYIVAVALAIFAFTTILGWSVYSEKCVQYLLGVKAVMPFRLI 395

Query: 407 LKLVLMASVFYGTVKTANLAWALGDVGVGLMAWLNIVGIIII 448
             LV    V  G + + +  W L D    +MA  N++ + ++
Sbjct: 396 WTLV----VPLGAMGSLDFVWLLADTLNAMMAIPNLIALALL 433