Pairwise Alignments

Query, 516 a.a., alanine:cation symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., sodium/alanine symporter (RefSeq) from Shewanella amazonensis SB2B

 Score =  214 bits (544), Expect = 7e-60
 Identities = 159/464 (34%), Positives = 227/464 (48%), Gaps = 42/464 (9%)

Query: 13  WSPALIYLCLGAGLF---YSVLTRFVQVRHFFEMWRLLLNNKESSKGISSFQALAVSLSG 69
           W P ++ L +G GLF   YS L  F  ++H  ++ R      +++  IS   AL+ +++G
Sbjct: 21  WGPHMLVLLVGGGLFFLIYSGLAPFRYLKHAIDIVRGKYPEADAAGNISHAGALSSAMAG 80

Query: 70  RVGTGNIAGVAAAIGFGGPGAVFWMWMVAFFGAATAYAESTLAQIYK-EEDNGEFRGGPA 128
            VG GNI GVA AI  GGPGA+FWMW+ A  G AT +   +LA +Y+  ++ G  RGGP 
Sbjct: 81  TVGMGNIGGVALAIVAGGPGAIFWMWVSALVGMATKFFTCSLAIMYRGTDETGRVRGGPM 140

Query: 129 YYIEKAMGQKWYAWVFAIATIFACGVLLPG----VQSNSIGNAVESAFGSGP---MIETA 181
           Y I   +GQKW         +F C V L G      +N +   ++      P    +   
Sbjct: 141 YIITHGLGQKWKP-----LAVFFCLVGLVGNFPLFNTNQLVQILKEYLFLSPGDTGVAVG 195

Query: 182 LGTFSFAKIFTGTVISILLGFIIFGGVKRIASFTQIVVPFMALAYIITAFVIILLNIGEV 241
            G     ++  G  I  L+  +I GG+KRIA+    VVP M L Y+  A  +IL ++G+V
Sbjct: 196 SGEHFALELGLGLAIMSLVALVILGGIKRIAAVAIRVVPTMILLYVGCALYVILSHLGDV 255

Query: 242 PRIIAMIVGDAFSPMAGVGAAIG---WGVKRGVYSNEAGQGTGPHAAAAASVEHPAQQGL 298
           P  +  IV DAFS  +  G  +G    GVKR  +SNEAG GT       A    P ++GL
Sbjct: 256 PMHLWRIVEDAFSVQSVAGGILGTMLTGVKRAAFSNEAGIGTEVMVHGNAKTSEPVKEGL 315

Query: 299 VQSFSIYIDTLMVCSATAFMILITGAYNVHGAAEGMFLVQNLPADIIASSPAFTQIAVDS 358
           V      IDTL+VC+ATA +ILI+G +   G A G+ L          SS AF      +
Sbjct: 316 VAMLGPAIDTLLVCTATALIILISGVWE-QGGANGISL----------SSAAFA-----A 359

Query: 359 ALPGIGKPFVAFALFFFAFTTILAYYYIAETNVAYIRRTFKVDGLMFVLKLVLMASVFYG 418
            +PGIG   +   + FFA TTI    +      A++   F      + L L L+A +F  
Sbjct: 360 TMPGIGPYLLLVCVSFFAITTIFTQAFYGSQCFAFL---FGARRERWYLYLYLLAILFAA 416

Query: 419 TVKTANLAWALGDVGVGLMAWLNIVGIIIIFFMSKPTMAALKDY 462
           T    ++   + D   GLMA   I  +     ++    AA KDY
Sbjct: 417 TNSLTDIVNII-DGAYGLMA---IPTMTAALLLAPRVRAAAKDY 456