Pairwise Alignments

Query, 516 a.a., alanine:cation symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., amino acid carrier protein (RefSeq) from Shewanella loihica PV-4

 Score =  349 bits (895), Expect = e-100
 Identities = 184/475 (38%), Positives = 294/475 (61%), Gaps = 40/475 (8%)

Query: 1   MQSFVDFLNGIIWSPALIYLCLGAGLFYSVLTRFVQVRHFFEMWRLLLNNKESSKGISSF 60
           + S ++ +NG++W   LIY+ + AG+ +++   F+Q+R F    +L+L  +E + GISSF
Sbjct: 9   VDSTINAVNGMLWGSVLIYVLVAAGVLFTLRLGFIQLRMFGHGSKLVLQGREKTNGISSF 68

Query: 61  QALAVSLSGRVGTGNIAGVAAAIGFGGPGAVFWMWMVAFFGAATAYAESTLAQIYKEED- 119
           Q    S++ RVGTGN+AGVA AI  GG GAVFWMW++A  G ATA+ ESTLAQ+YK +D 
Sbjct: 69  QVFCTSMAARVGTGNMAGVAVAITVGGAGAVFWMWLIALLGMATAFIESTLAQVYKVKDS 128

Query: 120 NGEFRGGPAYYIEKAMGQKWYAWVFAIATIFACGVLLPGVQSNSIGNAVESAFGSGPMIE 179
           +G++RGGPAYY+E+ +G++W   +F++  I A G      Q+N++ +A+ +AFG      
Sbjct: 129 DGQYRGGPAYYMEQGLGKRWMGSLFSVLLIIAFGFAFNAAQANTMTDALNNAFG------ 182

Query: 180 TALGTFSFAKIFTGTVISILLGFIIFGGVKRIASFTQIVVPFMALAYIITAFVIILLNIG 239
                    K   G VI  +  +II GG+K++A  ++++VP MA+AY+  A +++++N+ 
Sbjct: 183 -------LDKTMVGLVIVAVAAYIISGGLKKVAKASELIVPVMAVAYLAIALIVLVMNLE 235

Query: 240 EVPRIIAMIVGDAFSPMAGVGAAIG---WGVKRGVYSNEAGQGTGPHAAAAAS--VEHPA 294
           +VP  +A IV  AF      G A+G    G+ RG++SNEAG G+  + AA+AS    HPA
Sbjct: 236 QVPAALAYIVKSAFGWEEAAGGAMGAMMAGIARGLFSNEAGMGSAANIAASASPNPNHPA 295

Query: 295 QQGLVQSFSIYIDTLMVCSATAFMILITGAYNVHGAAEGMFLVQNLPADIIASSPAFTQI 354
            QG VQ   +++DT+++CSATA +IL++G  +  G  +G+ L+               Q+
Sbjct: 296 SQGFVQMIGVFVDTIVICSATAAIILLSGVLDAPGEQKGIGLL---------------QL 340

Query: 355 AVDSALPGIGKPFVAFALFFFAFTTILAYYYIAETNVAYIRRTFKVDGLMFVLKLVLMAS 414
           A+ + + G    FVAFA+  F F++I+A Y  AE+N+ ++ R+ KV   +++ + +++A 
Sbjct: 341 ALTNEVGGWAAYFVAFAIILFCFSSIIANYSYAESNIMFLSRSKKV---LYIFRALVLAM 397

Query: 415 VFYGTVKTANLAWALGDVGVGLMAWLNIVGIIIIFFMSKPTMAALKDYEDQQKQG 469
           V  G+V +  L W   DV +GLMA +NI  I++   +SK   A +KDYE Q K G
Sbjct: 398 VMAGSVASLQLVWNFADVSMGLMALVNIAAIVM---LSKVAFAVIKDYEVQLKAG 449