Pairwise Alignments

Query, 516 a.a., alanine:cation symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., amino acid carrier protein (RefSeq) from Shewanella loihica PV-4

 Score =  265 bits (678), Expect = 2e-75
 Identities = 176/487 (36%), Positives = 250/487 (51%), Gaps = 57/487 (11%)

Query: 4   FVDFLNGIIWSPALIYLCLGAGLFYSVLTRFVQVRHFFEMWRLLLN------NKESSKGI 57
           FV  +NG +W   ++ + LG GLF S   R + +      ++LL +      +K+    I
Sbjct: 7   FVSTINGFVWGTPMLVMILGVGLFLSFGLRLMPILKLGTGFKLLWSGRIPDKDKQMKGEI 66

Query: 58  SSFQALAVSLSGRVGTGNIAGVAAAIGFGGPGAVFWMWMVAFFGAATAYAESTLAQIYKE 117
           S F AL  SLS  +GTGNIAGVA AI  GGPGA+FWMW  A  G AT ++E+ LA  Y+E
Sbjct: 67  SPFNALMTSLSATIGTGNIAGVATAIFIGGPGALFWMWCTALVGMATKFSEAVLAVKYRE 126

Query: 118 -EDNGEFRGGPAYYIEKAMGQKWYAWV---FAIATIFACGVLLPGVQSNSIGNAVESAFG 173
            +DNG   GGP YYI+  +G KW AW+   FA+   FA   +   VQ+NS+ +A+ S FG
Sbjct: 127 VDDNGNHIGGPMYYIKNGLGSKW-AWLGTAFALFGSFAGFGIGNTVQANSVADALNSNFG 185

Query: 174 SGPMIETALGTFSFAKIFTGTVISILLGFIIFGGVKRIASFTQIVVPFMALAYIITAFVI 233
               +             TG V+ +L+G ++ GG+KRIA     +VP M + YI     +
Sbjct: 186 VPTWV-------------TGLVLMVLVGAVLMGGIKRIADVAGKLVPLMTVFYIAAGLSV 232

Query: 234 ILLNIGEVPRIIAMIVGDAFSPMAGVG--------AAIGWGVKRGVYSNEAGQGTGPHAA 285
           I++N   +P  IA+IV  AF+P+A  G        AA+ +GV RGV+SNEAG G+ P A 
Sbjct: 233 IVVNAAAIPDAIALIVHSAFNPVAAQGGFAGAAVWAAVRFGVARGVFSNEAGLGSAPIAH 292

Query: 286 AAASVEHPAQQGLVQSFSIYIDTLMVCSATAFMILITGAYNVHGAAEGMFLVQNLPADII 345
           AAA   +P  QGLV     +IDTL+VC+ T   I+++GA+                    
Sbjct: 293 AAAQTNNPVAQGLVAMLGTFIDTLVVCTITGLAIVVSGAWTSG----------------- 335

Query: 346 ASSPAFTQIAVDSALPGIGKPFVAFALFFFAFTTILAYYYIAETNVAYIRRTFKVDGLMF 405
            +  A T  A   ALP +G   VA AL  FAFTTIL +   +E  V Y+     V     
Sbjct: 336 ENGAALTSYAFSHALP-MGNYIVAIALSIFAFTTILGWSVYSEKCVQYLFGVRAVKPFRA 394

Query: 406 VLKLVLMASVFYGTVKTANLAWALGDVGVGLMAWLNIVGIIIIFFMSKPTMAALKDYEDQ 465
           +  +V    V  G V + +  W L D    L A + I  +I +  +S       ++Y  +
Sbjct: 395 IWVIV----VPLGAVSSLDFIWLLADT---LNAMMAIPNLIALSLLSPVVFGLTREYFIK 447

Query: 466 QKQGVTE 472
           ++Q   E
Sbjct: 448 KRQQEAE 454