Pairwise Alignments

Query, 516 a.a., alanine:cation symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., sodium:alanine symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  343 bits (880), Expect = 8e-99
 Identities = 194/516 (37%), Positives = 307/516 (59%), Gaps = 50/516 (9%)

Query: 1   MQSFVDFLNGIIWSPALIYLCLGAGLFYSVLTRFVQVRHFFEMWRLLLNNKESSK-GISS 59
           +++ V+FLN ++W   L+Y  +GAGL++++   F+Q+ HF    +++  +++  + G+SS
Sbjct: 2   LETIVNFLNALLWGKLLVYGLVGAGLYFTLRLVFIQLTHFKHSLKIMTMSRQGCESGLSS 61

Query: 60  FQALAVSLSGRVGTGNIAGVAAAIGFGGPGAVFWMWMVAFFGAATAYAESTLAQIYKEED 119
           FQ    S++ RVG GN+AGVA AIG  GPGAVFWMW++A  G ATA  ESTLAQ+YK  D
Sbjct: 62  FQVFCTSMAARVGAGNMAGVAVAIGAAGPGAVFWMWLIAMLGMATAMVESTLAQVYKVRD 121

Query: 120 -NGEFRGGPAYYIEKAMGQKWYAWVFAIATIFACGVLLPGVQSNSIGNAVESAFGSGPMI 178
            NG+FRGGP+YY+EK +GQ+W   +FA   I A G++   VQ+N+I  A+E  FG  P  
Sbjct: 122 ANGQFRGGPSYYMEKGLGQRWMGVLFAFFLIIAFGLVFNAVQANTITGAMERVFGFDP-- 179

Query: 179 ETALGTFSFAKIFTGTVISILLGFIIFGGVKRIASFTQIVVPFMALAYIITAFVIILLNI 238
                       + G  + +  GF+I GG++++A  ++ +VP MALAYI+ AF+I+L N+
Sbjct: 180 -----------TYVGIGLVLASGFVIMGGLRKVARVSEFIVPIMALAYILIAFIIVLFNL 228

Query: 239 GEVPRIIAMIVGDAF---SPMAG-----VGAAIGWGVKRGVYSNEAGQGTGPHAAAAAS- 289
            ++P +I++IV  AF      AG     V  A+  G+ RG++SNEAG G+  + AA+AS 
Sbjct: 229 EQLPAVISLIVKSAFGWQEAAAGGVAYTVAQAMQAGIARGLFSNEAGMGSAANVAASASP 288

Query: 290 -VEHPAQQGLVQSFSIYIDTLMVCSATAFMILITGAYNVHGAAEGMFLVQNLPADIIASS 348
              HPA QG VQ   +++DT+++C+ATA +IL++G  ++  + +G+ L  N         
Sbjct: 289 NPNHPASQGFVQMMGVFVDTIVICTATAAIILLSG--DIGSSDDGIRLTIN--------- 337

Query: 349 PAFTQIAVDSALPGIGKPFVAFALFFFAFTTILAYYYIAETNVAYIRRTFKVDGLMFVLK 408
                 A+ + +   G  F+A A+F F FT+I+A Y  AETNV ++  T      + + +
Sbjct: 338 ------AMSNHVGDWGGAFIAVAIFLFCFTSIIANYSYAETNVMFL--TGNSTKALPLFR 389

Query: 409 LVLMASVFYGTVKTANLAWALGDVGVGLMAWLNIVGIIIIFFMSKPTMAALKDYEDQQKQ 468
           L ++  V +G+V   +L W L DV +GLMA +NIV +++   +S   +  + DY DQ K 
Sbjct: 390 LCVLGMVMFGSVAKISLVWNLADVSMGLMATVNIVALLL---LSGLAIRVINDYCDQLKS 446

Query: 469 G-VTEFTFN--PVKLGIKGATYWEGKYLRKTGKAPT 501
           G + EF  +  P  +       W+   + +  KAP+
Sbjct: 447 GKMPEFDRSKFPELMEQLDDGIWQDNSVNELAKAPS 482