Pairwise Alignments

Query, 516 a.a., alanine:cation symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., sodium:alanine symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  594 bits (1531), Expect = e-174
 Identities = 300/492 (60%), Positives = 372/492 (75%), Gaps = 24/492 (4%)

Query: 1   MQSFVDFLNGIIWSPALIYLCLGAGLFYSVLTRFVQVRHFFEMWRLLLNNKESSKGISSF 60
           M   V+ +N I+WSPAL+YLCLG GLF+S+ +RF+Q+RH  EM RL+ + K +  G+SSF
Sbjct: 1   MNEIVNAVNNIVWSPALVYLCLGVGLFFSLRSRFLQLRHLPEMIRLMFDGKSTDAGVSSF 60

Query: 61  QALAVSLSGRVGTGNIAGVAAAIGFGGPGAVFWMWMVAFFGAATAYAESTLAQIYKEEDN 120
           QALA++L+GRVGTGNIAGVA AI FGGPGA+FWMWMVAF GA++A+ ESTL Q+YKE+ N
Sbjct: 61  QALAMTLAGRVGTGNIAGVATAITFGGPGALFWMWMVAFLGASSAFVESTLGQVYKEKIN 120

Query: 121 GEFRGGPAYYIEKAMGQKWYAWVFAIATIFACGVLLPGVQSNSIGNAVESAFGSGPMIET 180
           GE+RGGPA+YIEK +G KWYAW FAIATIFACGVLLPGVQ+NSIG ++++AF   P +  
Sbjct: 121 GEYRGGPAFYIEKGLGMKWYAWTFAIATIFACGVLLPGVQANSIGASLKTAFDIDPNV-- 178

Query: 181 ALGTFSFAKIFTGTVISILLGFIIFGGVKRIASFTQIVVPFMALAYIITAFVIILLNIGE 240
                      T  V+++LLGFIIFGGVKRIA+F  +VVPFMAL YII A VII LNI +
Sbjct: 179 -----------TAAVLAMLLGFIIFGGVKRIANFATLVVPFMALGYIIVACVIIALNIDQ 227

Query: 241 VPRIIAMIVGDAFSPMAGVGAAIG----WGVKRGVYSNEAGQGTGPHAAAAASVEHPAQQ 296
           +P I+ +I+  AF   AG GA +G    WGVKRGVYSNEAGQGTGPHA++AA+V HPA+Q
Sbjct: 228 LPGILWLIIKSAFGFDAGFGAILGLAIMWGVKRGVYSNEAGQGTGPHASSAAAVTHPAKQ 287

Query: 297 GLVQSFSIYIDTLMVCSATAFMILITGAYNVHGAAEGMFLVQNLPADIIASSPAFTQIAV 356
           GLVQ+FS+YIDTL VCSAT FM+LITG YNV G  +G  L   +    +A+   + Q A+
Sbjct: 288 GLVQAFSVYIDTLFVCSATGFMLLITGLYNVQG-PDGAALYTGIAG--VAAGSGYVQTAM 344

Query: 357 DSALPGIGKPFVAFALFFFAFTTILAYYYIAETNVAYIRRTFKVDGLMFVLKLVLMASVF 416
           +S +PG G  FVA ALFFFAFTTI+AYYYIAETN+AYI R      L  +LK+++MAS  
Sbjct: 345 ESMMPGFGNMFVAIALFFFAFTTIVAYYYIAETNIAYINRKVNRPWLTVMLKVIIMASTV 404

Query: 417 YGTVKTANLAWALGDVGVGLMAWLNIVGIIIIFFMSKPTMAALKDYEDQQKQGVTEFTFN 476
           YGTVKTA+LAW +GD+GVG+MAWLNI+ II+   + K     LKDYE QQKQG+ E  F+
Sbjct: 405 YGTVKTADLAWGMGDIGVGIMAWLNIIAIIL---LQKVAFTCLKDYESQQKQGI-EPQFD 460

Query: 477 PVKLGIKGATYW 488
           P KLGI  A YW
Sbjct: 461 PEKLGIPHADYW 472