Pairwise Alignments

Query, 516 a.a., alanine:cation symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., sodium:alanine symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  254 bits (648), Expect = 6e-72
 Identities = 167/459 (36%), Positives = 242/459 (52%), Gaps = 51/459 (11%)

Query: 2   QSFVDFLNGIIWSPALIYLCLGAGLFYSVLTRFVQVRHFFEMWRLLLNNKESSKGISSFQ 61
           Q+ +  LNGI+W P  + L +G G++ +   + +QV        LL    +    +SSF 
Sbjct: 4   QALLSSLNGIVWGPITLCLLVGTGVYLTTRLKLIQVFRLPMALSLLFKPAKGHGDLSSFA 63

Query: 62  ALAVSLSGRVGTGNIAGVAAAIGFGGPGAVFWMWMVAFFGAATAYAESTLAQIYKEED-N 120
           AL  +LS  +GTGNI GVA AI  GGPGA+FWMW+ AFFG AT YAE  LA  Y+  D  
Sbjct: 64  ALCTALSATIGTGNIVGVATAIKMGGPGALFWMWLAAFFGMATKYAECMLAVKYRTTDAR 123

Query: 121 GEFRGGPAYYIEKAMGQKWYAWVFAIATIFACGVLLPGV----QSNSIGNAVESAFGSGP 176
           G+  GGP YYIE+ +G +W A +FA   +F  GV   G+    Q N+I +A+  AF   P
Sbjct: 124 GQIAGGPMYYIERGLGLRWMAKLFA---LFGVGVAFFGIGTFAQVNAISDALTIAF-DVP 179

Query: 177 MIETALGTFSFAKIFTGTVISILLGFIIFGGVKRIASFTQIVVPFMALAYIITAFVIILL 236
              TAL            V+++L+  +  GGVKRI++  Q +VP M++ Y++ A V ILL
Sbjct: 180 TWTTAL------------VLTLLVAAVTLGGVKRISNVAQKLVPAMSIGYVL-ACVWILL 226

Query: 237 NIGE-VPRIIAMIVGDAFSPMAGVGA--------AIGWGVKRGVYSNEAGQGTGPHAAAA 287
              E +   + ++V  AF+P++  G         AI  G+ RGV+SNE+G G+ P AAAA
Sbjct: 227 GFAEAILPALQLVVESAFTPVSAAGGFLGATVAQAIQMGIARGVFSNESGLGSAPIAAAA 286

Query: 288 ASVEHPAQQGLVQSFSIYIDTLMVCSATAFMILITGAYNVHGAAEGMFLVQNLPADIIAS 347
           A    P +QGLV     + DT+++C+ T  +++ITG ++   A   M            +
Sbjct: 287 AKTNEPVEQGLVSMTGTFFDTIIICTMTGLVLIITGVWSGDTAGAAM------------T 334

Query: 348 SPAFTQIAVDSALPGIGKPFVAFALFFFAFTTILAYYYIAETNVAYIRRTFKVDGLMFVL 407
           S AF+          IG+  V  AL  FAFTTIL ++Y  E    Y+       GL    
Sbjct: 335 SAAFSL----GGSAAIGQYLVTIALVCFAFTTILGWHYYGERCWYYL---VGERGLR-AY 386

Query: 408 KLVLMASVFYGTVKTANLAWALGDVGVGLMAWLNIVGII 446
           ++V +  +  G     ++ W L D   GLMA  N++ II
Sbjct: 387 QIVFLGLIAGGAFIKLDVIWLLADTVNGLMAIPNLIAII 425