Pairwise Alignments

Query, 516 a.a., alanine:cation symporter family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., amino acid carrier protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  356 bits (913), Expect = e-102
 Identities = 198/481 (41%), Positives = 287/481 (59%), Gaps = 43/481 (8%)

Query: 3   SFVDFLNGIIWSPALIYLCLGAGLFYSVLTRFVQVRHFFEMWRLLLNN----KESSKGIS 58
           +F++ +N I+W+  LI + LG  +++S+ TRFVQ R   EM  LL  +    K+  K +S
Sbjct: 2   NFINEINDILWTYILIIMLLGCAVWFSIRTRFVQFRMLREMIILLSESAGKGKQGEKHVS 61

Query: 59  SFQALAVSLSGRVGTGNIAGVAAAIGFGGPGAVFWMWMVAFFGAATAYAESTLAQIYKEE 118
           SFQA A++++ RVGTGN+AGVA AI  GGPGAVFWMW++A  GA++A+ ESTLAQ+YK  
Sbjct: 62  SFQAFAITIASRVGTGNLAGVATAIAIGGPGAVFWMWVIALLGASSAFIESTLAQLYKIR 121

Query: 119 DNGEFRGGPAYYIEKAMGQKWYAWVFAIATIFACGVLLPGVQSNSIGNAVESAFGSGPMI 178
               F GGPAYY++K + Q W   +FA+      G     VQSN+I  A E AFG     
Sbjct: 122 GKDSFVGGPAYYMKKGLKQPWMGILFAVLISITFGFAFNSVQSNTICAAAEHAFG----- 176

Query: 179 ETALGTFSFAKIFTGTVISILLGFIIFGGVKRIASFTQIVVPFMALAYIITAFVIILLNI 238
                   F     G V++ L   IIFGG++RIA  + I+VP MAL Y+  A VI+LLNI
Sbjct: 177 --------FNHTVLGGVLTALTLVIIFGGIRRIAHVSSIIVPVMALGYVGLALVIVLLNI 228

Query: 239 GEVPRIIAMIVGDAF----SPMAGVGAAIGWGVKRGVYSNEAGQGTGPHAAAAASVEHPA 294
             +P +I++I+  AF    +   GVG A+  G+KRG++SNEAG G+ P+AAA A+V HP 
Sbjct: 229 THLPEVISLIISHAFGWEQALGGGVGMALMQGIKRGLFSNEAGMGSAPNAAATANVTHPV 288

Query: 295 QQGLVQSFSIYIDTLMVCSATAFMILITGAYNVHGAAEGMFLVQNLPADIIASSPAFTQI 354
           +QGL+Q+ +++ DTL+ C+ TAF+IL +GA                P D  ++    TQ 
Sbjct: 289 KQGLIQTLAVFTDTLLNCTCTAFIILFSGA----------------PLDGSSNGVQLTQQ 332

Query: 355 AVDSALPGIGKPFVAFALFFFAFTTILAYYYIAETNVAYIRRTFKVDGLMFVLKLVLMAS 414
           A+ + +   G  FVA ALFFFAF++IL  YY  E N+ +I        ++   ++++   
Sbjct: 333 ALTNEIGASGSIFVAVALFFFAFSSILGNYYYGEANIRFITAK---KWVLHTYRILVSGM 389

Query: 415 VFYGTVKTANLAWALGDVGVGLMAWLNIVGIIIIFFMSKPTMAALKDYEDQQKQGVTEFT 474
           V +G+V T +L W+L D+ + LMA  N++ II   F+ K  +  L DY  Q+K G+    
Sbjct: 390 VLFGSVATLDLVWSLADITMALMAVCNLIAII---FLGKYAIRLLSDYRAQKKAGIQSPV 446

Query: 475 F 475
           F
Sbjct: 447 F 447