Pairwise Alignments

Query, 308 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., nodulation protein NfeD from Pseudomonas fluorescens FW300-N2C3

 Score =  119 bits (297), Expect = 1e-31
 Identities = 92/298 (30%), Positives = 144/298 (48%), Gaps = 10/298 (3%)

Query: 8   DLNLLTVFDSVMKLGSVSKAADKLGMTSAAVSQNLSRLREQVGDPLFIRQGRGLQPTQYA 67
           DLNLL   D +++  ++++AA++L MT +A S  L RLR    D L  + GR +QPT YA
Sbjct: 7   DLNLLVALDVLLEEQNITRAAERLHMTQSATSGVLGRLRLYFEDELLAQVGRKMQPTPYA 66

Query: 68  LNMHKHVAEGLSAIRFGLETDAGFDPATSKREFIIGGQGYFDLVVLPPLLQKISDIAPHI 127
             +   V + L  I+  +     FDPATSKR F +    Y   V+   ++QKIS  APHI
Sbjct: 67  RELAAPVRQVLLTIQSSITAKPVFDPATSKRHFRLITSDYLISVLFARVIQKISLEAPHI 126

Query: 128 TVNLKSYEDDHFTPSQVLSEREADLFLAA---LPISHPSIVTTQVAEEALVVVYAKNHPR 184
           T  L    D   T +++L   EAD+ +     L   HPS +   + EE  V V    + +
Sbjct: 127 TFELLGPGD---TSTEMLMRGEADMMIVPERYLIEGHPSQL---LFEEEHVCVVWDGNTQ 180

Query: 185 LGSTLSFEQFFAEKHTALTSRRFGNYLFSS-LVDQVLPARRVHYQSESMLNLMATASVTD 243
           +G +++ +Q+    H ++   R         L+ Q    RR+   +     L      T 
Sbjct: 181 VGDSITLDQYIEMGHVSVIFGRNRQLSVEEWLMSQYGFTRRMEVVTHDFNTLPQLIVGTQ 240

Query: 244 LLCFTPKRLADMWAEKLGLQIQPLPFEIRSVPTFMCWHKAKQQDKGLIWLREQIEAIL 301
            +    +R+A ++A  L L+I   P +I  +  FM WH+  + D    WLR +I  I+
Sbjct: 241 RVATMLQRMARLYANYLPLRILQPPVKIPVMREFMLWHRTMEGDPMHRWLRAKISQII 298