Pairwise Alignments

Query, 308 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  142 bits (358), Expect = 1e-38
 Identities = 89/298 (29%), Positives = 149/298 (50%), Gaps = 6/298 (2%)

Query: 4   LRDYDLNLLTVFDSVMKLGSVSKAADKLGMTSAAVSQNLSRLREQVGDPLFIRQGRGLQP 63
           L++ DLNL  VFD++    ++++AA++L +T  AVS  LSRLR  + DPLFIR  + + P
Sbjct: 3   LQNVDLNLFVVFDAIYTERNLTRAAERLCITQPAVSNALSRLRTSLNDPLFIRTPKAMMP 62

Query: 64  TQYALNMHKHVAEGLSAIRFGLETDAGFDPATSKREFIIGGQGYFDLVVLPPLLQKISDI 123
           T  A NM   V E L  +   +     FDP  ++  F +G     +  +LP LL  +   
Sbjct: 63  TPVAENMIGQVREALKLLSSSMHLGDSFDPLLAEHHFQLGMFDVTEETMLPSLLAALQVH 122

Query: 124 APHITVNLKSYEDDHFTPSQVLSEREADLFLAALPISHPSIVTTQVAEEALVVVYAKNHP 183
           AP ++++  SY        +       DL + A  ++HP +    +     V +  K+HP
Sbjct: 123 APRLSIS--SYPVSREEMLKEFVSGRLDLAIDAPIVTHPDLYHHPLVTVPYVCLVRKDHP 180

Query: 184 RLGSTLSFEQFFAEKHTALTSRRFGNYLFSSLVDQVLPARRVHYQSESMLNLMATASVTD 243
            +G TLS EQ+ A  H  ++SRR G     + ++++   R +  +++         + T+
Sbjct: 181 EVGDTLSLEQYLALSHVHVSSRRQGVGYVDAALNRLGKHRNIQVRTKHHQAAPKLVAETN 240

Query: 244 LLCFTPKRLADMWAEKLGLQIQPLPFEIRSVPTFMCWHKAKQQDKGLIWLREQIEAIL 301
           L    P+ L    A+   L++  LPFE+  +   + WH++  QD    WLRE I A++
Sbjct: 241 LATTVPESL----AKNTDLKVLKLPFEVEPIEWHLYWHRSADQDNANRWLREFITALM 294