Pairwise Alignments

Query, 308 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  139 bits (350), Expect = 9e-38
 Identities = 89/290 (30%), Positives = 146/290 (50%), Gaps = 8/290 (2%)

Query: 8   DLNLLTVFDSVMKLGSVSKAADKLGMTSAAVSQNLSRLREQVGDPLFIRQGRGLQPTQYA 67
           DLNLL VF  V +  S ++AA +L +T ++VS  +SR R  VG+ LF R GRG++PT  A
Sbjct: 8   DLNLLRVFMVVYRTRSFTQAAQELDLTQSSVSNAISRFRAWVGESLFTRVGRGIEPTAVA 67

Query: 68  LNMHKHVAEGLSAIRFGLETDAGFDPATSKREFIIGGQGYFDLVVLPPLLQKISDIAPHI 127
             M++   + ++ I   L     FDP +S+R F +    Y +  V+  L   +  +    
Sbjct: 68  REMYRKFEQPMADIETVLLGFEHFDPHSSQRRFYV----YANESVIETLQAGVQALLQDA 123

Query: 128 TVNL---KSYEDDHFTPSQVLSEREADLFLAALPISHPSIVTTQVAEEALVVVYAKNHPR 184
            + +   +S   +      +L ER A + +   P     + +  +  E LV + ++ HPR
Sbjct: 124 DIEVIFRESPPQEAELYRDILLERVA-VAIDIKPAQQSLLSSKLLFTENLVCIVSRQHPR 182

Query: 185 LGSTLSFEQFFAEKHTALTSRRFGNYLFSSLVDQVLPARRVHYQSESMLNLMATASVTDL 244
           +   ++ EQ+F EKH  L  RRF         + VLP RR++ +  S+L++ AT   ++ 
Sbjct: 183 IQGVINHEQYFEEKHVFLNLRRFNLTAGDLFTEGVLPRRRMYSEQSSLLSMFATVGKSEA 242

Query: 245 LCFTPKRLADMWAEKLGLQIQPLPFEIRSVPTFMCWHKAKQQDKGLIWLR 294
           +   P R A  +A+  GLQI P+P + R +  +M W     Q+    WLR
Sbjct: 243 IGIAPLRYASQYADIFGLQILPMPLKTRPIDLYMVWSSKYTQNPSHQWLR 292