Pairwise Alignments

Query, 358 a.a., Fe(3+)-siderophore ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., iron-compound ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  145 bits (367), Expect = 1e-39
 Identities = 105/355 (29%), Positives = 165/355 (46%), Gaps = 39/355 (10%)

Query: 39  LVLSLIVLALM--ILATCVGKLPISISDV--------TAILLGE---VTSGFKRQVLLDI 85
           L+L+L+   L+  I A   G   IS  DV        + + +GE    T+    ++++++
Sbjct: 24  LMLALVGFTLLTPIAAASFGAANISFLDVFNVFIDKFSQLFMGENAPSTAAMTDRIVMEL 83

Query: 86  RLPRIFTALFAGAALGLSGAIFQSISRNPLGSPDIIGFTSGAATGALLQIILFSGSG--- 142
           RLPRI  A  AGA L L+G++ Q+++RNPL  P + G +SGA+ GA++ + LFSGSG   
Sbjct: 84  RLPRILLAFVAGAGLSLAGSVLQTVTRNPLADPYLFGISSGASFGAVVMLTLFSGSGFFA 143

Query: 143 ----------------------VAVVFSAIAGGVMTAIAVYLLSVKSGTVGRYRLVLTGI 180
                                  ++ F A  G  ++ + V  LS         R++L+G+
Sbjct: 144 NAGVIANSGIFSGAEILAGLQWFSLPFGAFIGASLSVLIVLALSGLGLNSQVERMLLSGV 203

Query: 181 GVGSVLTALNGLLLVKGSLDSAITANLWLSGSLHAREWSHVFPVMCGVLVLLPLIKSLAR 240
               +  AL  LLL   S  +  +   W  GS     WS +      VLV   +I    R
Sbjct: 204 ATSFMFGALTSLLLYFASPQATASVLFWSLGSFAKASWSLLILPTIVVLVSFFIILGWKR 263

Query: 241 SLQMLEMGDEIARQLGVVVEPIRLFMILAAVTLAALATGAAGPIAFIALAAPQLAARLRQ 300
            +  L+ GDE A  LGV V  +RL M+L    + A+     G I F+ L  P    RL  
Sbjct: 264 QIMALQAGDETAHTLGVNVPKLRLNMLLLCSLITAILVATCGGIGFVGLMIPH-TVRLLF 322

Query: 301 TANIPLVSAGLMGACLLLGADLLTQWMPLALTLPIGRITGLVGGMYLLILLMRSK 355
               P++   L+G   ++  D+L + +     LP+G IT  +G  + L++L R K
Sbjct: 323 PGRQPILLTALVGGLFMVWIDVLARCLLGNQELPVGIITASIGSFFFLLILRRRK 377