Pairwise Alignments

Query, 350 a.a., iron ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., transport system permease protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  160 bits (405), Expect = 5e-44
 Identities = 98/279 (35%), Positives = 156/279 (55%), Gaps = 8/279 (2%)

Query: 74  LRVPRTGLAILVGAALGAAGVIMQAMTRNPLADPGILGVNAGA----ILMVVIGIA--GF 127
           +R+PR  L +LVGAAL  AG +MQ + RNPLADPGI+GV+AGA    IL +V+G A   F
Sbjct: 75  IRLPRLALGLLVGAALAVAGAVMQGLFRNPLADPGIVGVSAGAGLGAILAIVLGAALPAF 134

Query: 128 GLTDMLHYL--WFGLFGAAATSVGVYLLAGINQSPNPVRVVLAGAAMTVVLLSMTHLIML 185
            +  + +YL       G   +++ +Y ++      +   ++LAG A+  +  +++ +++ 
Sbjct: 135 FIDALGNYLIPLAAFAGGWGSTILLYKVSTRRGRTSVATMLLAGIALAALTGALSGILVY 194

Query: 186 NSAQEVFNQFRHWSIGSLQGRGYEVLLPTSVFVLLGLIAAILLARGLDTVVLGHDAGKAL 245
            +          W +GSL G  +  +L     + +  ++A LLARGL+ + LG  A   +
Sbjct: 195 IADDRQLRDLTFWGLGSLAGATWTKVLIAGPLIAVAFLSAPLLARGLNGMALGEAAAAHM 254

Query: 246 GVNPLWIWIASAAVVTLLAGTATAAAGPISFLGLTAPHLARLWVGAEHRRLLPYSMLLGA 305
           GV    +   +  +V    G A A +G I F+G+  PHL R+ VG +HR LLP + LLGA
Sbjct: 255 GVALERLKTGAILIVASATGAAVAVSGGIGFVGIVVPHLLRIAVGPDHRTLLPNAALLGA 314

Query: 306 LLLLGADLAGRLIGSNDEISAGIMVALIGGPVFVLLVRR 344
            LL+ AD   R I +  E+  GI+ A++G PVF+ ++ R
Sbjct: 315 SLLVLADCISRTIIAPAELPIGIVTAVLGAPVFLWILLR 353



 Score = 23.9 bits (50), Expect = 0.007
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 10/45 (22%)

Query: 237 LGHDAGKALGVNP----------LWIWIASAAVVTLLAGTATAAA 271
           L H AG A G             LW+WI   AV     G   A A
Sbjct: 5   LSHQAGTAAGAEGGRYARAMRLHLWLWIFLLAVSAFSLGIGAAGA 49