Pairwise Alignments
Query, 438 a.a., vibriobactin biosynthesis amide synthase VibH from Vibrio cholerae E7946 ATCC 55056
Subject, 4146 a.a., Non-ribosomal peptide synthetase modules, pyoverdine from Pseudomonas fluorescens FW300-N2E2
Score = 64.3 bits (155), Expect = 7e-14
Identities = 94/386 (24%), Positives = 144/386 (37%), Gaps = 16/386 (4%)
Query: 6 AQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGE-- 63
AQ+ W P + ++RL+G L L +A V+ + R F Q +
Sbjct: 55 AQQRMWFLWQLEPDSGAYNLPGAVRLSGVLSLPALEQAFASLVARHETLRTVFQRQADDR 114
Query: 64 LYWHPFSPP--IDYQDLSIHL--EAEPLAWRQIEQDLQRSSTLIDAPITSHQVYRLSHSE 119
L P S P ID+ D S E E E R L P+ ++ +L E
Sbjct: 115 LLQVPASAPLVIDHADFSAIPADEREQAVRLAAEAQSMRPFDLACGPLLRVELLKLDEQE 174
Query: 120 HLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQTPTAAFKP--YQSYLEEEAAYLTSH 177
H++ HHIV DG+ M + + Y + +G P A P Y Y + +L +
Sbjct: 175 HVLLLTLHHIVSDGWSMNVLIDEFIRFYDAHEAGVAPQLADLPIQYSDYALWQRRWLEAG 234
Query: 178 RYWQDKQFWQGYL-REAPDLTLTSATYDPQLS--HAVSLSYTLNSQLNHLLLKLANANQI 234
+ +WQ L E P L L P L L + ++L L +A +
Sbjct: 235 ELQRQLDYWQAQLGDEHPVLELPLDYPRPMLPSYRGRRLEQVVEAELVEQLRGVARQQGV 294
Query: 235 GWPDALVALCALYLES-AEPDAPWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSL 293
L+ ++ L D + +P NR + G VN+ L Q L
Sbjct: 295 TLFMLLLGTFSILLHRYTGQDDLRVGVPVANRNRQEIEGLIGFFVNTQVLRVQLDGQARL 354
Query: 294 GNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTEL 353
G+ L+ + H E++ + L E+S +P ++ P AD T L
Sbjct: 355 GDLLRDVKETALGAQAHQDLPFERLV--EALKLERSLSYNPLFQVMYNHQPEVADV-TTL 411
Query: 354 KVLASGSAEGINFTFRGSPQHELCLD 379
KV SG G+ S Q +L LD
Sbjct: 412 KV-GSGLELGVIEWESRSTQFDLSLD 436
Score = 54.7 bits (130), Expect = 6e-11
Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 18/241 (7%)
Query: 1 MSMLLAQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSA 60
+S+L Q+ F++ +A H V LR PL L++AL+ V+ D R+RF+
Sbjct: 1123 LSLLPIQQVFFEDVIAQRHHWNQAVL--LRSHLPLQAPALMQALNALVAHHDALRSRFT- 1179
Query: 61 QGELYWHPFSPPIDYQDLSIHLEAEPLAWRQIEQDL----QRSSTLIDAPITSHQVYRLS 116
+ W P+ D + A+ L+ ++ QDL QRS L P+ + ++
Sbjct: 1180 ETPTGWRADVAPVAI-DPELLWTADNLSAAEL-QDLCAKAQRSLDLQKGPLLRGVLANMA 1237
Query: 117 HSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQT-----PTAAFKPYQSYLEEEA 171
+ HH+ +DG + + L + YQ +G T T+A+K + +L+
Sbjct: 1238 DGSQRLLLAVHHLAVDGVSWRILLEDLQRAYQQASAGATLRLPAKTSAYKAWGEHLQ--- 1294
Query: 172 AYLTSHRYWQDKQFWQGYLREA-PDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLAN 230
AY ++ + FWQ L+ A DL + Q +A L L+ L LL+ A
Sbjct: 1295 AYASTETLRAELTFWQQQLQGAVVDLPWDNPQGSRQSRYAKVLHSRLDKTLTQQLLQQAP 1354
Query: 231 A 231
A
Sbjct: 1355 A 1355
Score = 47.8 bits (112), Expect = 7e-09
Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 30/251 (11%)
Query: 29 LRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPLA 88
L+ T LD L +AL + D R F QGE + Y+D+ A L
Sbjct: 2660 LKPTQALDAQALEQALGALIEHHDSLRLDFIEQGEGW------TARYRDVEAQA-AGTLL 2712
Query: 89 WRQIEQDL----------QRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMML 138
W+ DL QRS L P+ + L+ + HH+V+DG +
Sbjct: 2713 WQADVADLAELEVLGNQAQRSLQLDGGPLLRALLANLADGTQRLLLIVHHLVVDGVSWRI 2772
Query: 139 FEQRLSQHYQSLLSG---QTP--TAAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREA 193
+ L Y+ +L+G Q P T+A + + + L++ Y S + FWQ L+ A
Sbjct: 2773 LFEDLQSAYRQMLAGTAVQLPAKTSAVQAWTAALQD---YAASAPLQAELGFWQQQLQGA 2829
Query: 194 P-DLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANA---NQIGWPDALVALCALYLE 249
L + Q S AV++ L+ L LL+ A A Q+ L AL + +
Sbjct: 2830 SVGLPWDNPQGGQQHSQAVTIRSALDKTLTRQLLQQAPAAYRTQVN-DLLLTALARVMVR 2888
Query: 250 SAEPDAPWLWL 260
D+ W+ L
Sbjct: 2889 WTGDDSVWVQL 2899
Score = 40.8 bits (94), Expect = 8e-07
Identities = 78/362 (21%), Positives = 136/362 (37%), Gaps = 59/362 (16%)
Query: 95 DLQRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQ 154
DL + L A + + +LS H + HHI++DG+ + Q Y +GQ
Sbjct: 1687 DLAKGFDLTQAGLLRVTLIQLSDERHHLIFTNHHILMDGWSSAQMLGEVLQRY----AGQ 1742
Query: 155 TPTAAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLS 214
P Y Y++ +L + FW G L + + TL L++A + S
Sbjct: 1743 QPPRPVSRYADYIQ----WLQRQDTALSETFWLGQLADLQEPTL--------LANAAAAS 1790
Query: 215 YTLNSQLNHLLLKLA-NANQIGWPDALVALCALYLESAEPDAPWLWLPFMNRW------- 266
+ S+ H L +A + G +A + + + A WL + R+
Sbjct: 1791 AEVRSESAHALRHYTLDAPRTGRLNAFARQQKVTVNTLVQAA---WLLLLQRYTGSDCVA 1847
Query: 267 -GSVAANVP----------GLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRI 315
G+ A P GL +N+LP++ S ++ +L SL +
Sbjct: 1848 FGTTVAGRPAELVGIEQQVGLFINTLPVIAGSRPDQTVAAWLAAVQARNLSLREFEHTPL 1907
Query: 316 EQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGINF---TFRGSP 372
I++ G + F ++L FE+ + L G+A+G+ F +
Sbjct: 1908 ANIQRWAGQGGG-----ALFDSLLVFENFPIS------AALQRGTAQGVVFGEVANQDQT 1956
Query: 373 QHELCLDIT-----ADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAEPAAL 427
+ L L +T A S+ Q+H+ R QLL ++ + R L E A
Sbjct: 1957 HYPLTLGVTLGETLALHMSFDQAHFS--VATIERLSAQLLHLLERFAESAERRLGEIALA 2014
Query: 428 AA 429
+A
Sbjct: 2015 SA 2016
Score = 40.8 bits (94), Expect = 8e-07
Identities = 83/359 (23%), Positives = 137/359 (38%), Gaps = 61/359 (16%)
Query: 35 LDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPLAWR---Q 91
+D A V D+ R+ F QG+L + P+ + + L W
Sbjct: 3134 IDPQRFRAAWQAVVDAHDILRSGFFWQGDL-----AQPVQIVQRQVEVPFRVLDWSGRTD 3188
Query: 92 IEQDLQRSSTLIDAP------ITSHQVYRL------SHSEHLIYTRAHHIVLDGYGMMLF 139
I+ LQ TL DA +T + RL S HLIYT HHI++DG+
Sbjct: 3189 IDDALQ---TLADAERAQGVDLTRAPLMRLVLVRTASDRHHLIYTN-HHILMDGWSSAQL 3244
Query: 140 EQRLSQHYQSLLSGQTPTAAFKPYQSYL--EEEAAYLTSHRYWQDKQFWQGYLREAPDLT 197
+ QHY+ S P ++ Y ++L ++EAA + FW LR T
Sbjct: 3245 LGEVLQHYRG-DSVARPAGRYRDYIAWLQRQDEAA---------SEAFWTPALRRLETPT 3294
Query: 198 ----LTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANANQIGWPDALVALCALYLESAEP 253
+ + Q H + L+ L L A A+++ + A L L+
Sbjct: 3295 RLADVMAKPAQAQAGHGDHVQ-VLDEALTRRLEAFARASKVTVNTLVQAAWLLLLQRYTG 3353
Query: 254 DAPWLWLPFMNRWGSVAANVP------GLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSL 307
+ F A+VP GL +N+LP++ + SL ++L+ +L
Sbjct: 3354 RDT---VAFGATVAGRPADVPGIEQQIGLFINTLPVIASPRAEQSLDSWLQTVQGQNLAL 3410
Query: 308 YLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGINF 366
+ I++ G E + F ++L FE+ A + L G+ +G+ F
Sbjct: 3411 REFEHTALLDIQRWAGQGGE-----TLFDSLLVFENYPIA------QALEQGAPDGLRF 3458