Pairwise Alignments

Query, 543 a.a., 2,3-dihydroxybenzoate-AMP ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (484), Expect = 8e-53
 Identities = 152/542 (28%), Positives = 246/542 (45%), Gaps = 45/542 (8%)

Query: 24  DKTLLDYLQQSAERTPNALALVGDNQ--QWRYQAMLERIEQLAAGFTELGLGCGDNVVLQ 81
           +KT+  YL   A   P  LA+V ++Q  +W Y+  L RI+ LAAG  +LG+G GD + + 
Sbjct: 35  EKTIGQYLDDIANTYPEQLAVVVNHQDIRWNYRQYLARIDALAAGLLKLGIGPGDRIGIW 94

Query: 82  LGNVAEFYLCFFALLRQGIRPILALPAHRLAEIRYFCQHSQAKAYLIDGAQRPFDY---- 137
             N  E+ L  FA  + G   +   PA+R  E++Y   +   +A +     +  +Y    
Sbjct: 95  SPNNIEWCLTQFATAKIGAIMVCINPAYRPEELQYALTNVGCRAVICADKFKSSNYLQML 154

Query: 138 QALAQELLACC---------PTLQTVIVRGQTRVT-----DPKFIELASCYSA--SSCQA 181
             LA EL  C          P LQ VI  G  +       D   +E+++   A       
Sbjct: 155 YTLAPELKECAAGQLQAKALPELQFVIRMGAEKSPGMLNFDDLLVEVSADDKAMLERIAN 214

Query: 182 NADPNQIAFFQLSGGTTGTPKLIPRTHNDYAYSVTASVEICRFDQHTRYLCVLPAAHNFP 241
              P      Q + GTTG+PK    +H++   +     E  +F    +    +P  H F 
Sbjct: 215 GLSPYDAINIQFTSGTTGSPKGATLSHHNILNNGYLVAEAMKFTCDDKLCIPVPLYHCFG 274

Query: 242 LSSPGALGVFWAGGCVVLSQDA-SPQHAFKLIEQHKITVTALVPPLALLWMDHAEKSTYD 300
           +   G L     G   V   D+  P    +++E+ + T    VP + +  ++H E + +D
Sbjct: 275 MVL-GNLVCLAKGAAAVFPGDSFDPLTTLEVVERERCTALHGVPTMFIAELEHPEFTRFD 333

Query: 301 LSSLHFVQVGGAKFSEAAARRLPKALGCQLQQVFGMAEGLVNY-----------TRLDDS 349
           LSSL    + GA   E   RR+        QQ+  M E L+ Y           T +D  
Sbjct: 334 LSSLRTGVMAGATCPEEVMRRV--------QQLMYMQEVLIGYGQTECSPLNHITEIDSP 385

Query: 350 AELIATTQGRPISAHDQLLVVDEQGQPVASGEEGYLLTQGPYTIRGYYRADQHNQRAFNA 409
            E    T GR +  H ++ +VDE G+ +   + G + ++G   ++ Y+   +      + 
Sbjct: 386 VEKRVLTVGRALP-HTEVKIVDEFGEVLPINQPGEVCSRGYCIMQCYWNDPEKTAATIDR 444

Query: 410 QGFYITGDKVKLSSEGYVIVTGRAKDQINRGGEKIAAEEVENQLLHHPAVHDAALIAISD 469
           +G+  +GD  ++  +GYV + GR KD I RGGE I   E+E +L  H  V DAA+  +  
Sbjct: 445 EGWLHSGDIGQMDEQGYVQIVGRIKDMIIRGGENIYPREIEEKLYTHKDVQDAAVFGVHS 504

Query: 470 EYLGERSCAVIVLKPEQSVNTIQLKRFLHQAGLADYKIPDQIQFIDQLPKTSVGKIDKNA 529
           +  GE  CA I ++   ++    ++ FL +   A +K+P  I+F+DQ P T  GKI K  
Sbjct: 505 DKYGEEVCAWIKVRSGATIKEEDIRHFLTEK-FAYFKVPRYIKFVDQYPMTVTGKIQKFK 563

Query: 530 LR 531
           +R
Sbjct: 564 MR 565