Pairwise Alignments

Query, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., GTPase and tRNA-U34 5-formylation enzyme TrmE from Pseudomonas fluorescens FW300-N2E2

 Score = 69.3 bits (168), Expect = 3e-16
 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 208 LAIIGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMKRDEREYVLIDTAGVRRRK 267
           + I GRPN GKS+L N + G E  +V ++ GTTRD +   +  D     ++DTAG+R   
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLR--- 275

Query: 268 RINETVEKFSVVKTLQAIEDANVVLLVVDARENISDQDLSL 308
             ++ VEK  V + L+AI +A+ VLLVVDA    +D   +L
Sbjct: 276 DTDDRVEKIGVERALKAIGEADRVLLVVDATAPEADDPFAL 316



 Score = 61.6 bits (148), Expect = 6e-14
 Identities = 54/172 (31%), Positives = 79/172 (45%), Gaps = 8/172 (4%)

Query: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGSE 64
           V + GRPN GKS+L N L     A+V +  G TRD       +      V+DT G+  ++
Sbjct: 219 VVIAGRPNAGKSSLLNALAGREAAIVTEIAGTTRDILREHIHIDGMPLHVVDTAGLRDTD 278

Query: 65  EGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIA---QHLRRIEKPA--ILVVNK 119
           + VE    +++L AI EAD VL +VD  A    AD+  A   + L     PA   L+ NK
Sbjct: 279 DRVEKIGVERALKAIGEADRVLLVVDATA--PEADDPFALWPEFLEVRPDPAKVTLIRNK 336

Query: 120 VDGIDADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRVLNPFAEQMESEQA 171
            D +  +A   E    G   +   A A G G+  L + +      +  SE +
Sbjct: 337 AD-LTGEAIVLEVSNDGHVTISLSAKAAGEGLELLREHLKACMGYEQTSESS 387